RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 POLR2AP24928 1970 aaKnown RBP20.55■□□□□ 0.88
LSM1-201ENST00000311351 RSBN1LQ6PCB5 846 aaPredicted RBP20.55■□□□□ 0.88
LSM1-201ENST00000311351 PODNQ7Z5L7 613 aa20.55■□□□□ 0.88
LSM1-201ENST00000311351 GLIS2Q9BZE0 524 aaPredicted RBP20.55■□□□□ 0.88
LSM1-201ENST00000311351 USP44Q9H0E7 712 aa20.55■□□□□ 0.88
LSM1-201ENST00000311351 PCNTO95613 3336 aa20.55■□□□□ 0.88
LSM1-201ENST00000311351 RABL6Q3YEC7 729 aaPredicted RBP20.54■□□□□ 0.88
LSM1-201ENST00000311351 RBM26Q5T8P6 1007 aaKnown RBP20.54■□□□□ 0.88
LSM1-201ENST00000311351 LDHAL6AQ6ZMR3 332 aa20.54■□□□□ 0.88
LSM1-201ENST00000311351 FBXW7Q969H0 707 aa20.54■□□□□ 0.88
LSM1-201ENST00000311351 CNNM1Q9NRU3 951 aa20.54■□□□□ 0.88
LSM1-201ENST00000311351 CNTNAP1P78357 1384 aa20.54■□□□□ 0.88
LSM1-201ENST00000311351 IRS2Q9Y4H2 1338 aa20.53■□□□□ 0.88
LSM1-201ENST00000311351 USP17L3A6NCW0 530 aa20.53■□□□□ 0.88
LSM1-201ENST00000311351 USP17L4A6NCW7 530 aa20.53■□□□□ 0.88
LSM1-201ENST00000311351 BRPF1P55201 1214 aaPredicted RBP20.53■□□□□ 0.88
LSM1-201ENST00000311351 USP17L1Q7RTZ2 530 aa20.53■□□□□ 0.88
LSM1-201ENST00000311351 MXD3Q9BW11 206 aa20.53■□□□□ 0.88
LSM1-201ENST00000311351 PUS3Q9BZE2 481 aaKnown RBP20.53■□□□□ 0.88
LSM1-201ENST00000311351 COA1Q9GZY4 146 aa20.53■□□□□ 0.88
LSM1-201ENST00000311351 PGAP2Q9UHJ9 254 aa20.53■□□□□ 0.88
LSM1-201ENST00000311351 PLIN1O60240 522 aa20.52■□□□□ 0.88
LSM1-201ENST00000311351 KIF4BQ2VIQ3 1234 aa20.52■□□□□ 0.88
LSM1-201ENST00000311351 AGBL3Q8NEM8 1001 aa20.52■□□□□ 0.88
LSM1-201ENST00000311351 ZC3H15Q8WU90 426 aaKnown RBP20.52■□□□□ 0.88
LSM1-201ENST00000311351 GMLQ99445 158 aa20.52■□□□□ 0.88
LSM1-201ENST00000311351 KIF16BQ96L93 1317 aa20.52■□□□□ 0.87
LSM1-201ENST00000311351 DACT2Q5SW24 774 aa20.51■□□□□ 0.87
LSM1-201ENST00000311351 API5Q9BZZ5 524 aaKnown RBP20.51■□□□□ 0.87
LSM1-201ENST00000311351 ASTN2O75129 1339 aaPredicted RBP20.51■□□□□ 0.87
LSM1-201ENST00000311351 ZNF280AP59817 542 aaPredicted RBP20.5■□□□□ 0.87
LSM1-201ENST00000311351 DLK2Q6UY11 383 aa20.5■□□□□ 0.87
LSM1-201ENST00000311351 ABT1Q9ULW3 272 aaKnown RBP20.5■□□□□ 0.87
LSM1-201ENST00000311351 CST9Q5W186 159 aa20.49■□□□□ 0.87
LSM1-201ENST00000311351 KLHDC4Q8TBB5 520 aa20.49■□□□□ 0.87
LSM1-201ENST00000311351 GGA3Q9NZ52 723 aa20.49■□□□□ 0.87
LSM1-201ENST00000311351 BCAR3O75815 825 aa20.48■□□□□ 0.87
LSM1-201ENST00000311351 USP17L8P0C7I0 530 aa20.48■□□□□ 0.87
LSM1-201ENST00000311351 LRRC24Q50LG9 513 aa20.48■□□□□ 0.87
LSM1-201ENST00000311351 STRIP1Q5VSL9 837 aa20.48■□□□□ 0.87
LSM1-201ENST00000311351 C15orf52Q6ZUT6 534 aaKnown RBP20.48■□□□□ 0.87
LSM1-201ENST00000311351 CDC37L1Q7L3B6 337 aa20.48■□□□□ 0.87
LSM1-201ENST00000311351 USP48Q86UV5 1035 aa20.48■□□□□ 0.87
LSM1-201ENST00000311351 ZNF408Q9H9D4 720 aa20.48■□□□□ 0.87
LSM1-201ENST00000311351 CD209Q9NNX6 404 aa20.48■□□□□ 0.87
LSM1-201ENST00000311351 TNNQ9UQP3 1299 aa20.48■□□□□ 0.87
LSM1-201ENST00000311351 RASSF10A6NK89 507 aa20.47■□□□□ 0.87
LSM1-201ENST00000311351 ADM5C9JUS6 153 aa20.47■□□□□ 0.87
LSM1-201ENST00000311351 CELF2O95319 508 aaKnown RBP20.47■□□□□ 0.87
LSM1-201ENST00000311351 UBTFL1P0CB47 393 aaPredicted RBP20.47■□□□□ 0.87
LSM1-201ENST00000311351 VEGFBP49765 207 aa20.47■□□□□ 0.87
LSM1-201ENST00000311351 GTF2IP78347 998 aa20.47■□□□□ 0.87
LSM1-201ENST00000311351 RIPOR2Q9Y4F9 1068 aa20.47■□□□□ 0.87
LSM1-201ENST00000311351 TTLL5Q6EMB2 1281 aa20.46■□□□□ 0.87
LSM1-201ENST00000311351 KRT26Q7Z3Y9 468 aa20.46■□□□□ 0.87
LSM1-201ENST00000311351 ZNF804AQ7Z570 1209 aa20.46■□□□□ 0.87
LSM1-201ENST00000311351 MYOZ2Q9NPC6 264 aa20.46■□□□□ 0.87
LSM1-201ENST00000311351 MYO3BQ8WXR4 1341 aa20.46■□□□□ 0.87
LSM1-201ENST00000311351 ARAP2Q8WZ64 1704 aa20.45■□□□□ 0.86
LSM1-201ENST00000311351 FRAT1Q92837 279 aaPredicted RBP20.45■□□□□ 0.86
LSM1-201ENST00000311351 MEIS3Q99687 375 aa20.45■□□□□ 0.86
LSM1-201ENST00000311351 ZBED9Q6R2W3 1325 aa20.45■□□□□ 0.86
LSM1-201ENST00000311351 MROH5Q6ZUA9 1318 aa20.45■□□□□ 0.86
LSM1-201ENST00000311351 THSD7BQ9C0I4 1608 aa20.45■□□□□ 0.86
LSM1-201ENST00000311351 HSPA1AP0DMV8 641 aaKnown RBP20.44■□□□□ 0.86
LSM1-201ENST00000311351 HSPA1BP0DMV9 641 aaKnown RBP20.44■□□□□ 0.86
LSM1-201ENST00000311351 TRIM27P14373 513 aa20.44■□□□□ 0.86
LSM1-201ENST00000311351 RFX5P48382 616 aaPredicted RBP20.44■□□□□ 0.86
LSM1-201ENST00000311351 SCARF1Q14162 830 aa20.44■□□□□ 0.86
LSM1-201ENST00000311351 DEFB115Q30KQ5 88 aa20.44■□□□□ 0.86
LSM1-201ENST00000311351 METTL24Q5JXM2 366 aa20.44■□□□□ 0.86
LSM1-201ENST00000311351 ARHGAP45Q92619 1136 aa20.44■□□□□ 0.86
LSM1-201ENST00000311351 DCPSQ96C86 337 aaKnown RBP20.44■□□□□ 0.86
LSM1-201ENST00000311351 JAG2Q9Y219 1238 aa20.44■□□□□ 0.86
LSM1-201ENST00000311351 IL1R1P14778 569 aa20.43■□□□□ 0.86
LSM1-201ENST00000311351 GYG1P46976 350 aa20.43■□□□□ 0.86
LSM1-201ENST00000311351 UBE4AQ14139 1066 aa20.43■□□□□ 0.86
LSM1-201ENST00000311351 ANGEL2Q5VTE6 544 aaKnown RBP20.43■□□□□ 0.86
LSM1-201ENST00000311351 PAXIP1Q6ZW49 1069 aaPredicted RBP20.43■□□□□ 0.86
LSM1-201ENST00000311351 KIAA0825Q8IV33 1275 aa20.43■□□□□ 0.86
LSM1-201ENST00000311351 CERS5Q8N5B7 392 aa20.43■□□□□ 0.86
LSM1-201ENST00000311351 LRRFIP2Q9Y608 721 aaKnown RBP20.43■□□□□ 0.86
LSM1-201ENST00000311351 TLL2Q9Y6L7 1015 aa20.43■□□□□ 0.86
LSM1-201ENST00000311351 INTS3Q68E01 1043 aaKnown RBP20.42■□□□□ 0.86
LSM1-201ENST00000311351 VGLL2Q8N8G2 317 aa20.42■□□□□ 0.86
LSM1-201ENST00000311351 SCAF8Q9UPN6 1271 aaKnown RBP20.42■□□□□ 0.86
LSM1-201ENST00000311351 SASH1O94885 1247 aa20.41■□□□□ 0.86
LSM1-201ENST00000311351 GRM1Q13255 1194 aa20.41■□□□□ 0.86
LSM1-201ENST00000311351 NBPF9Q3BBW0 867 aa20.41■□□□□ 0.86
LSM1-201ENST00000311351 ATF7IPQ6VMQ6 1270 aa20.41■□□□□ 0.86
LSM1-201ENST00000311351 SULF1Q8IWU6 871 aa20.41■□□□□ 0.86
LSM1-201ENST00000311351 OGFOD1Q8N543 542 aa20.41■□□□□ 0.86
LSM1-201ENST00000311351 CLUAP1Q96AJ1 413 aa20.41■□□□□ 0.86
LSM1-201ENST00000311351 IPO8O15397 1037 aaKnown RBP20.4■□□□□ 0.86
LSM1-201ENST00000311351 PTPN12Q05209 780 aaKnown RBP20.4■□□□□ 0.86
LSM1-201ENST00000311351 ECM29Q5VYK3 1845 aa20.4■□□□□ 0.86
LSM1-201ENST00000311351 CYP4F22Q6NT55 531 aa20.4■□□□□ 0.86
LSM1-201ENST00000311351 SAPCD2Q86UD0 394 aa20.4■□□□□ 0.86
LSM1-201ENST00000311351 FAM84BQ96KN1 310 aaPredicted RBP20.4■□□□□ 0.86
LSM1-201ENST00000311351 MYH13Q9UKX3 1938 aa20.39■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms