RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 C9orf78Q9NZ63 289 aaPredicted RBP24.75■■□□□ 1.55
LIME1-201ENST00000309546 ZNF804BA4D1E1 1349 aa24.75■■□□□ 1.55
LIME1-201ENST00000309546 ZNF609O15014 1411 aa24.75■■□□□ 1.55
LIME1-201ENST00000309546 ZNF646O15015 1829 aaPredicted RBP24.75■■□□□ 1.55
LIME1-201ENST00000309546 ADM5C9JUS6 153 aa24.74■■□□□ 1.55
LIME1-201ENST00000309546 E9PSI1 815 aa24.74■■□□□ 1.55
LIME1-201ENST00000309546 CHRNDQ07001 517 aa24.74■■□□□ 1.55
LIME1-201ENST00000309546 SAPCD2Q86UD0 394 aa24.74■■□□□ 1.55
LIME1-201ENST00000309546 SRCIN1Q9C0H9 1055 aa24.74■■□□□ 1.55
LIME1-201ENST00000309546 GGA3Q9NZ52 723 aa24.74■■□□□ 1.55
LIME1-201ENST00000309546 KLRK1P26718 216 aa24.73■■□□□ 1.55
LIME1-201ENST00000309546 EPHA10Q5JZY3 1008 aa24.73■■□□□ 1.55
LIME1-201ENST00000309546 LMBR1LQ6UX01 489 aa24.73■■□□□ 1.55
LIME1-201ENST00000309546 TXNRD3Q86VQ6 643 aa24.73■■□□□ 1.55
LIME1-201ENST00000309546 ASTN2O75129 1339 aaPredicted RBP24.72■■□□□ 1.55
LIME1-201ENST00000309546 ALDH1L1O75891 902 aa24.72■■□□□ 1.55
LIME1-201ENST00000309546 USP17L8P0C7I0 530 aa24.72■■□□□ 1.55
LIME1-201ENST00000309546 COA1Q9GZY4 146 aa24.72■■□□□ 1.55
LIME1-201ENST00000309546 WBP1LQ9NX94 342 aa24.72■■□□□ 1.55
LIME1-201ENST00000309546 CTCFP49711 727 aaPredicted RBP24.71■■□□□ 1.55
LIME1-201ENST00000309546 ZNF280AP59817 542 aaPredicted RBP24.71■■□□□ 1.55
LIME1-201ENST00000309546 MAP2K1Q02750 393 aaPredicted RBP24.71■■□□□ 1.55
LIME1-201ENST00000309546 TAF7LQ5H9L4 462 aa24.71■■□□□ 1.55
LIME1-201ENST00000309546 MRPL50Q8N5N7 158 aaKnown RBP24.71■■□□□ 1.55
LIME1-201ENST00000309546 MXD3Q9BW11 206 aa24.71■■□□□ 1.55
LIME1-201ENST00000309546 CCDC57Q2TAC2 916 aa24.7■■□□□ 1.54
LIME1-201ENST00000309546 SULF1Q8IWU6 871 aa24.7■■□□□ 1.54
LIME1-201ENST00000309546 HELBQ8NG08 1087 aaPredicted RBP24.7■■□□□ 1.54
LIME1-201ENST00000309546 GMLQ99445 158 aa24.7■■□□□ 1.54
LIME1-201ENST00000309546 MYOZ2Q9NPC6 264 aa24.7■■□□□ 1.54
LIME1-201ENST00000309546 TAF5LO75529 589 aa24.69■■□□□ 1.54
LIME1-201ENST00000309546 SCARF1Q14162 830 aa24.69■■□□□ 1.54
LIME1-201ENST00000309546 DACT2Q5SW24 774 aa24.69■■□□□ 1.54
LIME1-201ENST00000309546 ANGEL2Q5VTE6 544 aaKnown RBP24.69■■□□□ 1.54
LIME1-201ENST00000309546 ZNF594Q96JF6 807 aaPredicted RBP24.69■■□□□ 1.54
LIME1-201ENST00000309546 SNAP23O00161 211 aa24.68■■□□□ 1.54
LIME1-201ENST00000309546 AOC2O75106 756 aa24.68■■□□□ 1.54
LIME1-201ENST00000309546 SLFN5Q08AF3 891 aa24.68■■□□□ 1.54
LIME1-201ENST00000309546 MYO3BQ8WXR4 1341 aa24.67■■□□□ 1.54
LIME1-201ENST00000309546 HUNKP57058 714 aa24.67■■□□□ 1.54
LIME1-201ENST00000309546 STRIP1Q5VSL9 837 aa24.67■■□□□ 1.54
LIME1-201ENST00000309546 CDCA7LQ96GN5 454 aa24.67■■□□□ 1.54
LIME1-201ENST00000309546 SUCLG2Q96I99 432 aa24.67■■□□□ 1.54
LIME1-201ENST00000309546 CAPN15O75808 1086 aa24.66■■□□□ 1.54
LIME1-201ENST00000309546 LBX1P52954 281 aa24.66■■□□□ 1.54
LIME1-201ENST00000309546 SSH1Q8WYL5 1049 aa24.66■■□□□ 1.54
LIME1-201ENST00000309546 HHIPL1Q96JK4 782 aa24.66■■□□□ 1.54
LIME1-201ENST00000309546 BEGAINQ9BUH8 593 aa24.66■■□□□ 1.54
LIME1-201ENST00000309546 GBA2Q9HCG7 927 aaPredicted RBP24.66■■□□□ 1.54
LIME1-201ENST00000309546 CNNM1Q9NRU3 951 aa24.66■■□□□ 1.54
LIME1-201ENST00000309546 PTPRCP08575 1304 aa24.65■■□□□ 1.54
LIME1-201ENST00000309546 PLIN1O60240 522 aa24.65■■□□□ 1.54
LIME1-201ENST00000309546 NBPF7P0C2Y1 421 aaPredicted RBP24.65■■□□□ 1.54
LIME1-201ENST00000309546 TTLL5Q6EMB2 1281 aa24.65■■□□□ 1.54
LIME1-201ENST00000309546 LDHAL6AQ6ZMR3 332 aa24.65■■□□□ 1.54
LIME1-201ENST00000309546 OGFOD1Q8N543 542 aa24.65■■□□□ 1.54
LIME1-201ENST00000309546 PRDM10Q9NQV6 1147 aa24.65■■□□□ 1.54
LIME1-201ENST00000309546 GTF2IP78347 998 aa24.64■■□□□ 1.54
LIME1-201ENST00000309546 C2orf69Q8N8R5 385 aa24.64■■□□□ 1.54
LIME1-201ENST00000309546 CDCA5Q96FF9 252 aa24.64■■□□□ 1.54
LIME1-201ENST00000309546 CD209Q9NNX6 404 aa24.64■■□□□ 1.54
LIME1-201ENST00000309546 CCER2I3L3R5 266 aa24.63■■□□□ 1.53
LIME1-201ENST00000309546 HSPA8P11142 646 aaKnown RBP24.63■■□□□ 1.53
LIME1-201ENST00000309546 SCAF8Q9UPN6 1271 aaKnown RBP24.63■■□□□ 1.53
LIME1-201ENST00000309546 MAP2K2P36507 400 aa24.62■■□□□ 1.53
LIME1-201ENST00000309546 KIAA0825Q8IV33 1275 aa24.62■■□□□ 1.53
LIME1-201ENST00000309546 KAZALD1Q96I82 304 aa24.62■■□□□ 1.53
LIME1-201ENST00000309546 SMC4Q9NTJ3 1288 aa24.62■■□□□ 1.53
LIME1-201ENST00000309546 IRS2Q9Y4H2 1338 aa24.61■■□□□ 1.53
LIME1-201ENST00000309546 NBPF9Q3BBW0 867 aa24.61■■□□□ 1.53
LIME1-201ENST00000309546 ZNF804AQ7Z570 1209 aa24.61■■□□□ 1.53
LIME1-201ENST00000309546 UTYO14607 1347 aa24.61■■□□□ 1.53
LIME1-201ENST00000309546 PITPNM2Q9BZ72 1349 aa24.61■■□□□ 1.53
LIME1-201ENST00000309546 SASH1O94885 1247 aa24.6■■□□□ 1.53
LIME1-201ENST00000309546 BICC1Q9H694 974 aaKnown RBP24.6■■□□□ 1.53
LIME1-201ENST00000309546 ALDH1L2Q3SY69 923 aa24.59■■□□□ 1.53
LIME1-201ENST00000309546 RGMBQ6NW40 437 aa24.59■■□□□ 1.53
LIME1-201ENST00000309546 C15orf52Q6ZUT6 534 aaKnown RBP24.59■■□□□ 1.53
LIME1-201ENST00000309546 TSKSQ9UJT2 592 aa24.59■■□□□ 1.53
LIME1-201ENST00000309546 HDAC9Q9UKV0 1011 aa24.59■■□□□ 1.53
LIME1-201ENST00000309546 WNT10BO00744 389 aa24.58■■□□□ 1.53
LIME1-201ENST00000309546 NOGQ13253 232 aa24.58■■□□□ 1.53
LIME1-201ENST00000309546 PUS3Q9BZE2 481 aaKnown RBP24.58■■□□□ 1.53
LIME1-201ENST00000309546 PAPPA2Q9BXP8 1791 aa24.57■■□□□ 1.52
LIME1-201ENST00000309546 JAG2Q9Y219 1238 aa24.57■■□□□ 1.52
LIME1-201ENST00000309546 ZNF157P51786 506 aaPredicted RBP24.56■■□□□ 1.52
LIME1-201ENST00000309546 BRPF1P55201 1214 aaPredicted RBP24.56■■□□□ 1.52
LIME1-201ENST00000309546 PRAMEF18Q5VWM3 479 aa24.56■■□□□ 1.52
LIME1-201ENST00000309546 ANKRD44Q8N8A2 993 aa24.56■■□□□ 1.52
LIME1-201ENST00000309546 ZIC5Q96T25 663 aa24.56■■□□□ 1.52
LIME1-201ENST00000309546 F8W031 263 aaPredicted RBP24.55■■□□□ 1.52
LIME1-201ENST00000309546 IL1R1P14778 569 aa24.55■■□□□ 1.52
LIME1-201ENST00000309546 RABL6Q3YEC7 729 aaPredicted RBP24.55■■□□□ 1.52
LIME1-201ENST00000309546 TRMT2AQ8IZ69 625 aaKnown RBP24.55■■□□□ 1.52
LIME1-201ENST00000309546 CERS5Q8N5B7 392 aa24.55■■□□□ 1.52
LIME1-201ENST00000309546 FAM155AB1AL88 458 aaPredicted RBP24.54■■□□□ 1.52
LIME1-201ENST00000309546 MMP14P50281 582 aa24.54■■□□□ 1.52
LIME1-201ENST00000309546 CCDC102AQ96A19 550 aa24.54■■□□□ 1.52
LIME1-201ENST00000309546 ECM29Q5VYK3 1845 aa24.54■■□□□ 1.52
LIME1-201ENST00000309546 UBE4AQ14139 1066 aa24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms