RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 PODNQ7Z5L7 613 aa16.29■□□□□ 0.2
CD44-203ENST00000278386 H7C1W4 665 aa16.28■□□□□ 0.2
CD44-203ENST00000278386 CA12O43570 354 aa16.28■□□□□ 0.2
CD44-203ENST00000278386 USP17L8P0C7I0 530 aa16.28■□□□□ 0.2
CD44-203ENST00000278386 ITGA6P23229 1130 aa16.28■□□□□ 0.2
CD44-203ENST00000278386 ZNF280AP59817 542 aaPredicted RBP16.28■□□□□ 0.2
CD44-203ENST00000278386 NCBP3Q53F19 620 aaKnown RBP16.28■□□□□ 0.2
CD44-203ENST00000278386 RGMBQ6NW40 437 aa16.28■□□□□ 0.2
CD44-203ENST00000278386 MPHOSPH8Q99549 860 aa16.28■□□□□ 0.2
CD44-203ENST00000278386 MYOZ2Q9NPC6 264 aa16.28■□□□□ 0.2
CD44-203ENST00000278386 ECM29Q5VYK3 1845 aa16.27■□□□□ 0.2
CD44-203ENST00000278386 ZNF316A6NFI3 1004 aaPredicted RBP16.27■□□□□ 0.2
CD44-203ENST00000278386 WTIPA6NIX2 430 aaPredicted RBP16.27■□□□□ 0.2
CD44-203ENST00000278386 EXOSC9Q06265 439 aaKnown RBP16.27■□□□□ 0.2
CD44-203ENST00000278386 SCARF1Q14162 830 aa16.27■□□□□ 0.2
CD44-203ENST00000278386 WDR63Q8IWG1 891 aa16.27■□□□□ 0.2
CD44-203ENST00000278386 LINS1Q8NG48 757 aa16.27■□□□□ 0.2
CD44-203ENST00000278386 CDCA5Q96FF9 252 aa16.27■□□□□ 0.2
CD44-203ENST00000278386 ABHD8Q96I13 439 aa16.27■□□□□ 0.2
CD44-203ENST00000278386 PLA2G12BQ9BX93 195 aa16.27■□□□□ 0.2
CD44-203ENST00000278386 KCNJ4P48050 445 aa16.26■□□□□ 0.19
CD44-203ENST00000278386 ZNF157P51786 506 aaPredicted RBP16.26■□□□□ 0.19
CD44-203ENST00000278386 LEMD3Q9Y2U8 911 aa16.26■□□□□ 0.19
CD44-203ENST00000278386 CHMP3Q9Y3E7 222 aa16.26■□□□□ 0.19
CD44-203ENST00000278386 ZNF804BA4D1E1 1349 aa16.25■□□□□ 0.19
CD44-203ENST00000278386 MYO3BQ8WXR4 1341 aa16.25■□□□□ 0.19
CD44-203ENST00000278386 ZIC5Q96T25 663 aa16.25■□□□□ 0.19
CD44-203ENST00000278386 GMLQ99445 158 aa16.25■□□□□ 0.19
CD44-203ENST00000278386 ANKRD2Q9GZV1 360 aa16.25■□□□□ 0.19
CD44-203ENST00000278386 COA1Q9GZY4 146 aa16.25■□□□□ 0.19
CD44-203ENST00000278386 PITPNM2Q9BZ72 1349 aa16.24■□□□□ 0.19
CD44-203ENST00000278386 ANKRD18BA2A2Z9 1011 aa16.24■□□□□ 0.19
CD44-203ENST00000278386 F6X3S4 739 aa16.24■□□□□ 0.19
CD44-203ENST00000278386 VAMP4O75379 141 aa16.24■□□□□ 0.19
CD44-203ENST00000278386 CASP7P55210 303 aa16.24■□□□□ 0.19
CD44-203ENST00000278386 FAM9BQ8IZU0 186 aa16.24■□□□□ 0.19
CD44-203ENST00000278386 OGFOD1Q8N543 542 aa16.24■□□□□ 0.19
CD44-203ENST00000278386 CCDC102AQ96A19 550 aa16.24■□□□□ 0.19
CD44-203ENST00000278386 MXD3Q9BW11 206 aa16.24■□□□□ 0.19
CD44-203ENST00000278386 FAM155AB1AL88 458 aaPredicted RBP16.23■□□□□ 0.19
CD44-203ENST00000278386 KLRK1P26718 216 aa16.23■□□□□ 0.19
CD44-203ENST00000278386 CHRNDQ07001 517 aa16.23■□□□□ 0.19
CD44-203ENST00000278386 DACT2Q5SW24 774 aa16.23■□□□□ 0.19
CD44-203ENST00000278386 STRIP1Q5VSL9 837 aa16.23■□□□□ 0.19
CD44-203ENST00000278386 TXNRD3Q86VQ6 643 aa16.23■□□□□ 0.19
CD44-203ENST00000278386 SCAF8Q9UPN6 1271 aaKnown RBP16.23■□□□□ 0.19
CD44-203ENST00000278386 CSF1RP07333 972 aa16.22■□□□□ 0.19
CD44-203ENST00000278386 SLC10A3P09131 477 aa16.22■□□□□ 0.19
CD44-203ENST00000278386 IFIT5Q13325 482 aaKnown RBP16.22■□□□□ 0.19
CD44-203ENST00000278386 CCDC85CA6NKD9 419 aa16.21■□□□□ 0.19
CD44-203ENST00000278386 SASH1O94885 1247 aa16.21■□□□□ 0.19
CD44-203ENST00000278386 KIF23Q02241 960 aaPredicted RBP16.21■□□□□ 0.19
CD44-203ENST00000278386 NBPF9Q3BBW0 867 aa16.21■□□□□ 0.19
CD44-203ENST00000278386 SPINK5Q9NQ38 1064 aaPredicted RBP16.21■□□□□ 0.19
CD44-203ENST00000278386 HDAC9Q9UKV0 1011 aa16.21■□□□□ 0.19
CD44-203ENST00000278386 ARAP2Q8WZ64 1704 aa16.21■□□□□ 0.19
CD44-203ENST00000278386 FKBP1BP68106 108 aa16.2■□□□□ 0.18
CD44-203ENST00000278386 TTLL12Q14166 644 aaPredicted RBP16.2■□□□□ 0.18
CD44-203ENST00000278386 TAF7LQ5H9L4 462 aa16.2■□□□□ 0.18
CD44-203ENST00000278386 BEND3Q5T5X7 828 aa16.2■□□□□ 0.18
CD44-203ENST00000278386 TTLL5Q6EMB2 1281 aa16.2■□□□□ 0.18
CD44-203ENST00000278386 RASAL3Q86YV0 1011 aa16.2■□□□□ 0.18
CD44-203ENST00000278386 KIAA0825Q8IV33 1275 aa16.2■□□□□ 0.18
CD44-203ENST00000278386 MCOLN1Q9GZU1 580 aa16.2■□□□□ 0.18
CD44-203ENST00000278386 WNT10BO00744 389 aa16.19■□□□□ 0.18
CD44-203ENST00000278386 TAF5LO75529 589 aa16.19■□□□□ 0.18
CD44-203ENST00000278386 NF2P35240 595 aa16.19■□□□□ 0.18
CD44-203ENST00000278386 GTF2IP78347 998 aa16.19■□□□□ 0.18
CD44-203ENST00000278386 DGKZQ13574 1117 aa16.19■□□□□ 0.18
CD44-203ENST00000278386 PRAMEF18Q5VWM3 479 aa16.19■□□□□ 0.18
CD44-203ENST00000278386 SLC4A10Q6U841 1118 aa16.19■□□□□ 0.18
CD44-203ENST00000278386 HELBQ8NG08 1087 aaPredicted RBP16.19■□□□□ 0.18
CD44-203ENST00000278386 SAGE1Q9NXZ1 904 aa16.19■□□□□ 0.18
CD44-203ENST00000278386 GRM8O00222 908 aa16.18■□□□□ 0.18
CD44-203ENST00000278386 FOXO4P98177 505 aa16.18■□□□□ 0.18
CD44-203ENST00000278386 CCDC57Q2TAC2 916 aa16.18■□□□□ 0.18
CD44-203ENST00000278386 LMBR1LQ6UX01 489 aa16.18■□□□□ 0.18
CD44-203ENST00000278386 ZNF804AQ7Z570 1209 aa16.18■□□□□ 0.18
CD44-203ENST00000278386 C9orf78Q9NZ63 289 aaPredicted RBP16.18■□□□□ 0.18
CD44-203ENST00000278386 SNAP23O00161 211 aa16.17■□□□□ 0.18
CD44-203ENST00000278386 TRPA1O75762 1119 aa16.17■□□□□ 0.18
CD44-203ENST00000278386 MOB2Q70IA6 237 aa16.17■□□□□ 0.18
CD44-203ENST00000278386 APOBEC3FQ8IUX4 373 aaKnown RBP16.17■□□□□ 0.18
CD44-203ENST00000278386 CD209Q9NNX6 404 aa16.17■□□□□ 0.18
CD44-203ENST00000278386 CNNM1Q9NRU3 951 aa16.17■□□□□ 0.18
CD44-203ENST00000278386 COL1A1P02452 1464 aaPredicted RBP16.16■□□□□ 0.18
CD44-203ENST00000278386 PLIN1O60240 522 aa16.16■□□□□ 0.18
CD44-203ENST00000278386 MMP14P50281 582 aa16.16■□□□□ 0.18
CD44-203ENST00000278386 EPHA10Q5JZY3 1008 aa16.16■□□□□ 0.18
CD44-203ENST00000278386 ZNF594Q96JF6 807 aaPredicted RBP16.16■□□□□ 0.18
CD44-203ENST00000278386 SRCIN1Q9C0H9 1055 aa16.16■□□□□ 0.18
CD44-203ENST00000278386 RNF186Q9NXI6 227 aa16.16■□□□□ 0.18
CD44-203ENST00000278386 UBE2Q2LH0YL09 131 aa16.15■□□□□ 0.18
CD44-203ENST00000278386 CSRNP1Q96S65 589 aa16.15■□□□□ 0.18
CD44-203ENST00000278386 MYH13Q9UKX3 1938 aa16.15■□□□□ 0.18
CD44-203ENST00000278386 F8W031 263 aaPredicted RBP16.14■□□□□ 0.17
CD44-203ENST00000278386 ALDH1L1O75891 902 aa16.14■□□□□ 0.17
CD44-203ENST00000278386 PRKG1Q13976 671 aa16.14■□□□□ 0.17
CD44-203ENST00000278386 LDHAL6AQ6ZMR3 332 aa16.14■□□□□ 0.17
CD44-203ENST00000278386 REM2Q8IYK8 340 aaPredicted RBP16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms