RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 RIC1Q4ADV7 1423 aa12.29□□□□□ -0.44
UPF3B-201ENST00000276201 ARFGEF1Q9Y6D6 1849 aa12.29□□□□□ -0.44
UPF3B-201ENST00000276201 KLRG2A4D1S0 409 aaPredicted RBP12.28□□□□□ -0.44
UPF3B-201ENST00000276201 GADD45BO75293 160 aaPredicted RBP12.28□□□□□ -0.44
UPF3B-201ENST00000276201 KIF20AO95235 890 aa12.28□□□□□ -0.44
UPF3B-201ENST00000276201 DDX58O95786 925 aaKnown RBP12.28□□□□□ -0.44
UPF3B-201ENST00000276201 ZSCAN22P10073 491 aaPredicted RBP12.28□□□□□ -0.44
UPF3B-201ENST00000276201 FLIIQ13045 1269 aa12.28□□□□□ -0.44
UPF3B-201ENST00000276201 DALRD3Q5D0E6 543 aaKnown RBP12.28□□□□□ -0.44
UPF3B-201ENST00000276201 TTC14Q96N46 770 aa12.28□□□□□ -0.44
UPF3B-201ENST00000276201 PI4KAP2A4QPH2 592 aa12.28□□□□□ -0.44
UPF3B-201ENST00000276201 CTIFO43310 598 aaKnown RBP12.28□□□□□ -0.44
UPF3B-201ENST00000276201 SRGNP10124 158 aa12.28□□□□□ -0.44
UPF3B-201ENST00000276201 KSR2Q6VAB6 950 aa12.28□□□□□ -0.44
UPF3B-201ENST00000276201 PI4KAP1Q8N8J0 262 aa12.28□□□□□ -0.44
UPF3B-201ENST00000276201 KIAA1524Q8TCG1 905 aa12.28□□□□□ -0.44
UPF3B-201ENST00000276201 ANKRD7Q92527 254 aa12.28□□□□□ -0.44
UPF3B-201ENST00000276201 MAP3K2Q9Y2U5 619 aa12.28□□□□□ -0.44
UPF3B-201ENST00000276201 UTRNP46939 3433 aa12.28□□□□□ -0.44
UPF3B-201ENST00000276201 TRIM28Q13263 835 aaKnown RBP12.27□□□□□ -0.44
UPF3B-201ENST00000276201 SYNE4Q8N205 404 aa12.27□□□□□ -0.44
UPF3B-201ENST00000276201 ZNF622Q969S3 477 aaKnown RBP eCLIP12.27□□□□□ -0.443e-7■■■□□ 14.6
UPF3B-201ENST00000276201 MYD88Q99836 296 aa12.27□□□□□ -0.44
UPF3B-201ENST00000276201 METTL22Q9BUU2 404 aaPredicted RBP12.27□□□□□ -0.44
UPF3B-201ENST00000276201 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.27□□□□□ -0.44
UPF3B-201ENST00000276201 RAD50Q92878 1312 aa12.27□□□□□ -0.45
UPF3B-201ENST00000276201 RAB11FIP3O75154 756 aa12.27□□□□□ -0.45
UPF3B-201ENST00000276201 STYK1Q6J9G0 422 aa12.27□□□□□ -0.45
UPF3B-201ENST00000276201 C3orf67Q6ZVT6 689 aa12.27□□□□□ -0.45
UPF3B-201ENST00000276201 TTLL6Q8N841 843 aa12.27□□□□□ -0.45
UPF3B-201ENST00000276201 CHAMP1Q96JM3 812 aa12.27□□□□□ -0.45
UPF3B-201ENST00000276201 TRMT112Q9UI30 125 aaKnown RBP12.27□□□□□ -0.45
UPF3B-201ENST00000276201 CRY2Q49AN0 593 aa12.26□□□□□ -0.45
UPF3B-201ENST00000276201 MASTLQ96GX5 879 aa12.26□□□□□ -0.45
UPF3B-201ENST00000276201 CCDC171Q6TFL3 1326 aa12.26□□□□□ -0.45
UPF3B-201ENST00000276201 CHD4Q14839 1912 aa12.26□□□□□ -0.45
UPF3B-201ENST00000276201 GOLGA6L6A8MZA4 724 aa12.26□□□□□ -0.45
UPF3B-201ENST00000276201 SLC10A5Q5PT55 438 aa12.26□□□□□ -0.45
UPF3B-201ENST00000276201 DNTTIP2Q5QJE6 756 aaKnown RBP12.26□□□□□ -0.45
UPF3B-201ENST00000276201 ANO2Q9NQ90 1003 aa12.26□□□□□ -0.45
UPF3B-201ENST00000276201 SH3TC1Q8TE82 1336 aa12.25□□□□□ -0.45
UPF3B-201ENST00000276201 NPR1P16066 1061 aa12.25□□□□□ -0.45
UPF3B-201ENST00000276201 KCNB2Q92953 911 aa12.25□□□□□ -0.45
UPF3B-201ENST00000276201 FEZ1Q99689 392 aa12.25□□□□□ -0.45
UPF3B-201ENST00000276201 SLX4Q8IY92 1834 aa12.25□□□□□ -0.45
UPF3B-201ENST00000276201 CACNA1SQ13698 1873 aa12.25□□□□□ -0.45
UPF3B-201ENST00000276201 F13A1P00488 732 aa12.25□□□□□ -0.45
UPF3B-201ENST00000276201 IGKV5-2P06315 115 aa12.25□□□□□ -0.45
UPF3B-201ENST00000276201 HCLS1P14317 486 aaPredicted RBP12.25□□□□□ -0.45
UPF3B-201ENST00000276201 LIMCH1Q9UPQ0 1083 aa12.25□□□□□ -0.45
UPF3B-201ENST00000276201 DDX60Q8IY21 1712 aaKnown RBP12.25□□□□□ -0.45
UPF3B-201ENST00000276201 LAMB2P55268 1798 aa12.24□□□□□ -0.45
UPF3B-201ENST00000276201 STX6O43752 255 aa12.24□□□□□ -0.45
UPF3B-201ENST00000276201 PRPF40BQ6NWY9 871 aaKnown RBP12.24□□□□□ -0.45
UPF3B-201ENST00000276201 CCDC191Q8NCU4 936 aa12.24□□□□□ -0.45
UPF3B-201ENST00000276201 CNKSR1Q969H4 720 aa12.24□□□□□ -0.45
UPF3B-201ENST00000276201 FAM89AQ96GI7 184 aa12.24□□□□□ -0.45
UPF3B-201ENST00000276201 ZSCAN31Q96LW9 406 aaPredicted RBP12.24□□□□□ -0.45
UPF3B-201ENST00000276201 SGSM2O43147 1006 aa12.23□□□□□ -0.45
UPF3B-201ENST00000276201 CHAF1AQ13111 956 aaPredicted RBP12.23□□□□□ -0.45
UPF3B-201ENST00000276201 FOXD4L5Q5VV16 416 aaPredicted RBP12.23□□□□□ -0.45
UPF3B-201ENST00000276201 SSH3Q8TE77 659 aa12.23□□□□□ -0.45
UPF3B-201ENST00000276201 FOXD4L4Q8WXT5 416 aaPredicted RBP12.23□□□□□ -0.45
UPF3B-201ENST00000276201 DNAAF4Q8WXU2 420 aa12.23□□□□□ -0.45
UPF3B-201ENST00000276201 TM6SF1Q9BZW5 370 aa12.23□□□□□ -0.45
UPF3B-201ENST00000276201 CWC25Q9NXE8 425 aaPredicted RBP12.23□□□□□ -0.45
UPF3B-201ENST00000276201 F6X3S4 739 aa12.23□□□□□ -0.45
UPF3B-201ENST00000276201 CWF19L2Q2TBE0 894 aaKnown RBP12.23□□□□□ -0.45
UPF3B-201ENST00000276201 ARHGAP27Q6ZUM4 889 aa12.23□□□□□ -0.45
UPF3B-201ENST00000276201 SH2B1Q9NRF2 756 aaPredicted RBP12.23□□□□□ -0.45
UPF3B-201ENST00000276201 ELP1O95163 1332 aa12.23□□□□□ -0.45
UPF3B-201ENST00000276201 NEURL1BA8MQ27 555 aa12.22□□□□□ -0.45
UPF3B-201ENST00000276201 HOXA10P31260 410 aaPredicted RBP12.22□□□□□ -0.45
UPF3B-201ENST00000276201 NEXNQ0ZGT2 675 aa12.22□□□□□ -0.45
UPF3B-201ENST00000276201 ZBTB38Q8NAP3 1195 aaPredicted RBP12.22□□□□□ -0.45
UPF3B-201ENST00000276201 NLRP3Q96P20 1036 aa12.22□□□□□ -0.45
UPF3B-201ENST00000276201 LSG1Q9H089 658 aaKnown RBP12.22□□□□□ -0.45
UPF3B-201ENST00000276201 TTC12Q9H892 705 aaPredicted RBP12.22□□□□□ -0.45
UPF3B-201ENST00000276201 ZNF219Q9P2Y4 722 aaPredicted RBP12.22□□□□□ -0.45
UPF3B-201ENST00000276201 CNPY2Q9Y2B0 182 aa12.22□□□□□ -0.45
UPF3B-201ENST00000276201 SNX14Q9Y5W7 946 aa12.22□□□□□ -0.45
UPF3B-201ENST00000276201 APBB1O00213 710 aa12.22□□□□□ -0.45
UPF3B-201ENST00000276201 C21orf2O43822 256 aa12.22□□□□□ -0.45
UPF3B-201ENST00000276201 SYT1P21579 422 aa12.22□□□□□ -0.45
UPF3B-201ENST00000276201 YY1P25490 414 aa12.22□□□□□ -0.45
UPF3B-201ENST00000276201 POLA2Q14181 598 aa12.22□□□□□ -0.45
UPF3B-201ENST00000276201 JARID2Q92833 1246 aaPredicted RBP12.22□□□□□ -0.45
UPF3B-201ENST00000276201 RPGRQ92834 1020 aaKnown RBP12.22□□□□□ -0.45
UPF3B-201ENST00000276201 EXOC6BQ9Y2D4 811 aa12.22□□□□□ -0.45
UPF3B-201ENST00000276201 IRS4O14654 1257 aaPredicted RBP12.21□□□□□ -0.45
UPF3B-201ENST00000276201 PCCAP05165 728 aaPredicted RBP12.21□□□□□ -0.45
UPF3B-201ENST00000276201 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.21□□□□□ -0.45
UPF3B-201ENST00000276201 PDCL2Q8N4E4 241 aa12.21□□□□□ -0.45
UPF3B-201ENST00000276201 C7orf43Q8WVR3 580 aa12.21□□□□□ -0.45
UPF3B-201ENST00000276201 KCNF1Q9H3M0 494 aa12.21□□□□□ -0.45
UPF3B-201ENST00000276201 CCDC192P0DO97 292 aa12.21□□□□□ -0.46
UPF3B-201ENST00000276201 TRIM6-TRIM34B2RNG4 842 aa12.2□□□□□ -0.46
UPF3B-201ENST00000276201 VPS53Q5VIR6 699 aa12.2□□□□□ -0.46
UPF3B-201ENST00000276201 TAF3Q5VWG9 929 aa12.2□□□□□ -0.46
UPF3B-201ENST00000276201 LINS1Q8NG48 757 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms