RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 JAKMIP1Q96N16 626 aaKnown RBP19.84■□□□□ 0.77
USP4-201ENST00000265560 MINPP1Q9UNW1 487 aa19.84■□□□□ 0.77
USP4-201ENST00000265560 MYO5AQ9Y4I1 1855 aaKnown RBP19.84■□□□□ 0.77
USP4-201ENST00000265560 SLC5A1P13866 664 aa19.83■□□□□ 0.77
USP4-201ENST00000265560 RPS8P62241 208 aaKnown RBP19.83■□□□□ 0.77
USP4-201ENST00000265560 SLC10A5Q5PT55 438 aa19.83■□□□□ 0.77
USP4-201ENST00000265560 ZGPATQ8N5A5 531 aaKnown RBP19.83■□□□□ 0.77
USP4-201ENST00000265560 MAP4K1Q92918 833 aa19.83■□□□□ 0.77
USP4-201ENST00000265560 OSBP2Q969R2 916 aa19.83■□□□□ 0.77
USP4-201ENST00000265560 PIH1D3Q9NQM4 214 aaKnown RBP19.83■□□□□ 0.77
USP4-201ENST00000265560 CREB3L3Q68CJ9 461 aa19.83■□□□□ 0.76
USP4-201ENST00000265560 PRR5LQ6MZQ0 368 aa19.83■□□□□ 0.76
USP4-201ENST00000265560 UBR3Q6ZT12 1888 aa19.83■□□□□ 0.76
USP4-201ENST00000265560 M0R2C6 588 aa19.82■□□□□ 0.76
USP4-201ENST00000265560 RASGRF1Q13972 1273 aa19.82■□□□□ 0.76
USP4-201ENST00000265560 NECTIN1Q15223 517 aa19.82■□□□□ 0.76
USP4-201ENST00000265560 SERPINB2P05120 415 aa19.82■□□□□ 0.76
USP4-201ENST00000265560 COL23A1Q86Y22 540 aaPredicted RBP19.82■□□□□ 0.76
USP4-201ENST00000265560 HMG20BQ9P0W2 317 aa19.82■□□□□ 0.76
USP4-201ENST00000265560 MED23Q9ULK4 1368 aa19.82■□□□□ 0.76
USP4-201ENST00000265560 RNF113AO15541 343 aaKnown RBP19.82■□□□□ 0.76
USP4-201ENST00000265560 DDR1Q08345 913 aa19.82■□□□□ 0.76
USP4-201ENST00000265560 JAG2Q9Y219 1238 aa19.82■□□□□ 0.76
USP4-201ENST00000265560 EN1Q05925 392 aaPredicted RBP19.81■□□□□ 0.76
USP4-201ENST00000265560 PUS7LQ9H0K6 701 aaKnown RBP19.81■□□□□ 0.76
USP4-201ENST00000265560 SLC27A2O14975 620 aa19.81■□□□□ 0.76
USP4-201ENST00000265560 TM4SF1P30408 202 aa19.81■□□□□ 0.76
USP4-201ENST00000265560 CARMIL3Q8ND23 1372 aa19.81■□□□□ 0.76
USP4-201ENST00000265560 AKAP11Q9UKA4 1901 aa19.81■□□□□ 0.76
USP4-201ENST00000265560 SSFA2P28290 1259 aa19.8■□□□□ 0.76
USP4-201ENST00000265560 SLC9C2Q5TAH2 1124 aa19.8■□□□□ 0.76
USP4-201ENST00000265560 GPR101Q96P66 508 aaPredicted RBP19.8■□□□□ 0.76
USP4-201ENST00000265560 MAST3O60307 1309 aa19.8■□□□□ 0.76
USP4-201ENST00000265560 ANAPC15P60006 121 aa19.8■□□□□ 0.76
USP4-201ENST00000265560 BSDC1Q9NW68 430 aaPredicted RBP19.8■□□□□ 0.76
USP4-201ENST00000265560 CASZ1Q86V15 1759 aa19.8■□□□□ 0.76
USP4-201ENST00000265560 TMX3Q96JJ7 454 aa19.8■□□□□ 0.76
USP4-201ENST00000265560 WWC3Q9ULE0 1092 aa19.8■□□□□ 0.76
USP4-201ENST00000265560 ADRA2BP18089 450 aa19.79■□□□□ 0.76
USP4-201ENST00000265560 ZMYM1Q5SVZ6 1142 aa19.79■□□□□ 0.76
USP4-201ENST00000265560 TTLL5Q6EMB2 1281 aa19.79■□□□□ 0.76
USP4-201ENST00000265560 LAMB2P55268 1798 aa19.79■□□□□ 0.76
USP4-201ENST00000265560 SPATA5Q8NB90 893 aa19.79■□□□□ 0.76
USP4-201ENST00000265560 EZH2Q15910 746 aaKnown RBP19.78■□□□□ 0.76
USP4-201ENST00000265560 PLSCR1O15162 318 aa19.78■□□□□ 0.76
USP4-201ENST00000265560 ZKSCAN1P17029 563 aaPredicted RBP19.78■□□□□ 0.76
USP4-201ENST00000265560 TXNRD3Q86VQ6 643 aa19.78■□□□□ 0.76
USP4-201ENST00000265560 RTL9Q8NET4 1388 aa19.78■□□□□ 0.76
USP4-201ENST00000265560 PKP1Q13835 747 aa19.77■□□□□ 0.76
USP4-201ENST00000265560 FOXD4L5Q5VV16 416 aaPredicted RBP19.77■□□□□ 0.76
USP4-201ENST00000265560 FOXD4L4Q8WXT5 416 aaPredicted RBP19.77■□□□□ 0.76
USP4-201ENST00000265560 ABCF2Q9UG63 623 aa19.77■□□□□ 0.76
USP4-201ENST00000265560 AK2P54819 239 aa19.77■□□□□ 0.76
USP4-201ENST00000265560 VPS37DQ86XT2 251 aa19.77■□□□□ 0.76
USP4-201ENST00000265560 TNRC6CQ9HCJ0 1690 aaKnown RBP19.77■□□□□ 0.76
USP4-201ENST00000265560 HAND2P61296 217 aa19.76■□□□□ 0.75
USP4-201ENST00000265560 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.76■□□□□ 0.75
USP4-201ENST00000265560 HSPD1P10809 573 aaKnown RBP19.76■□□□□ 0.75
USP4-201ENST00000265560 CYP21A2P08686 494 aa19.76■□□□□ 0.75
USP4-201ENST00000265560 ARID4AP29374 1257 aaPredicted RBP19.76■□□□□ 0.75
USP4-201ENST00000265560 LRRC2Q9BYS8 371 aa19.76■□□□□ 0.75
USP4-201ENST00000265560 ANKIB1Q9P2G1 1089 aa19.76■□□□□ 0.75
USP4-201ENST00000265560 AKT1S1Q96B36 256 aa19.75■□□□□ 0.75
USP4-201ENST00000265560 LRP5O75197 1615 aa19.75■□□□□ 0.75
USP4-201ENST00000265560 ZNF532Q9HCE3 1301 aa19.75■□□□□ 0.75
USP4-201ENST00000265560 PDGFDQ9GZP0 370 aaPredicted RBP19.75■□□□□ 0.75
USP4-201ENST00000265560 ANO8Q9HCE9 1232 aaPredicted RBP19.75■□□□□ 0.75
USP4-201ENST00000265560 HELLSQ9NRZ9 838 aa19.75■□□□□ 0.75
USP4-201ENST00000265560 CHMP5Q9NZZ3 219 aa19.75■□□□□ 0.75
USP4-201ENST00000265560 POLRMTO00411 1230 aaKnown RBP19.74■□□□□ 0.75
USP4-201ENST00000265560 DEFB132Q7Z7B7 95 aa19.74■□□□□ 0.75
USP4-201ENST00000265560 MAGEB6Q8N7X4 407 aa19.74■□□□□ 0.75
USP4-201ENST00000265560 RPGRQ92834 1020 aaKnown RBP19.74■□□□□ 0.75
USP4-201ENST00000265560 LARGE1O95461 756 aa19.74■□□□□ 0.75
USP4-201ENST00000265560 UQCRFS1P1P0C7P4 283 aa19.74■□□□□ 0.75
USP4-201ENST00000265560 RUFY3Q7L099 469 aa19.74■□□□□ 0.75
USP4-201ENST00000265560 FAM84BQ96KN1 310 aaPredicted RBP19.74■□□□□ 0.75
USP4-201ENST00000265560 OLFM4Q6UX06 510 aa19.73■□□□□ 0.75
USP4-201ENST00000265560 PDRG1Q9NUG6 133 aa19.73■□□□□ 0.75
USP4-201ENST00000265560 CYP46A1Q9Y6A2 500 aa19.73■□□□□ 0.75
USP4-201ENST00000265560 COL24A1Q17RW2 1714 aa19.73■□□□□ 0.75
USP4-201ENST00000265560 GPAA1O43292 621 aa19.73■□□□□ 0.75
USP4-201ENST00000265560 PDE6AP16499 860 aa19.73■□□□□ 0.75
USP4-201ENST00000265560 ST5P78524 1137 aa19.73■□□□□ 0.75
USP4-201ENST00000265560 CHST3Q7LGC8 479 aa19.73■□□□□ 0.75
USP4-201ENST00000265560 FBXO41Q8TF61 875 aa19.73■□□□□ 0.75
USP4-201ENST00000265560 TTC14Q96N46 770 aa19.73■□□□□ 0.75
USP4-201ENST00000265560 RGL2O15211 777 aa19.72■□□□□ 0.75
USP4-201ENST00000265560 FOXP2O15409 715 aa19.72■□□□□ 0.75
USP4-201ENST00000265560 APPP05067 770 aa19.72■□□□□ 0.75
USP4-201ENST00000265560 DDIT3P35638 169 aa19.72■□□□□ 0.75
USP4-201ENST00000265560 MIGA1Q8NAN2 632 aa19.72■□□□□ 0.75
USP4-201ENST00000265560 LRP2BPQ9P2M1 347 aa19.72■□□□□ 0.75
USP4-201ENST00000265560 MMP10P09238 476 aa19.72■□□□□ 0.75
USP4-201ENST00000265560 ADD2P35612 726 aa19.72■□□□□ 0.75
USP4-201ENST00000265560 CHAF1AQ13111 956 aaPredicted RBP19.72■□□□□ 0.75
USP4-201ENST00000265560 RNF20Q5VTR2 975 aa19.72■□□□□ 0.75
USP4-201ENST00000265560 STOX1Q6ZVD7 989 aa19.72■□□□□ 0.75
USP4-201ENST00000265560 CHAMP1Q96JM3 812 aa19.72■□□□□ 0.75
USP4-201ENST00000265560 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.72■□□□□ 0.756e-7■■■■□ 23.1
Retrieved 100 of 20,778 RNA–protein pairs in 687.3 ms