RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ERCC6L2Q5T890 1561 aa12.28□□□□□ -0.44
CD44-201ENST00000263398 CTAGE15A4D2H0 777 aa12.28□□□□□ -0.44
CD44-201ENST00000263398 CTAGE8P0CG41 777 aa12.28□□□□□ -0.44
CD44-201ENST00000263398 STAT6P42226 847 aa12.28□□□□□ -0.44
CD44-201ENST00000263398 HSP90AA4PQ58FG1 418 aa12.28□□□□□ -0.44
CD44-201ENST00000263398 CTAGE6Q86UF2 777 aa12.28□□□□□ -0.44
CD44-201ENST00000263398 CTAGE4Q8IX94 777 aa12.28□□□□□ -0.44
CD44-201ENST00000263398 DDX21Q9NR30 783 aaKnown RBP eCLIP12.28□□□□□ -0.44
CD44-201ENST00000263398 BABAM1Q9NWV8 329 aa12.28□□□□□ -0.44
CD44-201ENST00000263398 LMAN1P49257 510 aa12.28□□□□□ -0.44
CD44-201ENST00000263398 APOBRQ0VD83 1088 aa12.28□□□□□ -0.44
CD44-201ENST00000263398 MSH6P52701 1360 aa12.28□□□□□ -0.44
CD44-201ENST00000263398 ZMYM4Q5VZL5 1548 aa12.28□□□□□ -0.44
CD44-201ENST00000263398 GCOM1H8Y6P7 765 aaPredicted RBP12.28□□□□□ -0.44
CD44-201ENST00000263398 MYZAPP0CAP1 466 aa12.28□□□□□ -0.44
CD44-201ENST00000263398 NFATC2IPQ8NCF5 419 aa12.28□□□□□ -0.44
CD44-201ENST00000263398 LRRC59Q96AG4 307 aaKnown RBP12.27□□□□□ -0.44
CD44-201ENST00000263398 HLA-DOAP06340 250 aa12.27□□□□□ -0.45
CD44-201ENST00000263398 CCDC175P0C221 793 aa12.27□□□□□ -0.45
CD44-201ENST00000263398 GSTO1P78417 241 aa12.27□□□□□ -0.45
CD44-201ENST00000263398 SMC1AQ14683 1233 aaKnown RBP12.27□□□□□ -0.45
CD44-201ENST00000263398 PPP4R3AQ6IN85 833 aa12.27□□□□□ -0.45
CD44-201ENST00000263398 G2E3Q7L622 706 aa12.27□□□□□ -0.45
CD44-201ENST00000263398 GOPCQ9HD26 462 aa12.27□□□□□ -0.45
CD44-201ENST00000263398 INCENPQ9NQS7 918 aa12.27□□□□□ -0.45
CD44-201ENST00000263398 CHL1O00533 1208 aa12.27□□□□□ -0.45
CD44-201ENST00000263398 MYO1BO43795 1136 aa12.27□□□□□ -0.45
CD44-201ENST00000263398 GNAT2P19087 354 aa12.27□□□□□ -0.45
CD44-201ENST00000263398 PTGS1P23219 599 aa12.27□□□□□ -0.45
CD44-201ENST00000263398 IFI16Q16666 785 aaKnown RBP12.27□□□□□ -0.45
CD44-201ENST00000263398 NAA16Q6N069 864 aaPredicted RBP12.27□□□□□ -0.45
CD44-201ENST00000263398 SPAG5Q96R06 1193 aa12.27□□□□□ -0.45
CD44-201ENST00000263398 TRIM35Q9UPQ4 493 aa12.27□□□□□ -0.45
CD44-201ENST00000263398 OTUD7AQ8TE49 926 aaPredicted RBP12.27□□□□□ -0.45
CD44-201ENST00000263398 BCCIPQ9P287 314 aaKnown RBP eCLIP12.27□□□□□ -0.45
CD44-201ENST00000263398 HOXB7P09629 217 aa12.26□□□□□ -0.45
CD44-201ENST00000263398 CALML3P27482 149 aa12.26□□□□□ -0.45
CD44-201ENST00000263398 PHF23Q9BUL5 403 aaPredicted RBP12.26□□□□□ -0.45
CD44-201ENST00000263398 CALM1P0DP23 149 aa12.26□□□□□ -0.45
CD44-201ENST00000263398 CALM2P0DP24 149 aa12.26□□□□□ -0.45
CD44-201ENST00000263398 CALM3P0DP25 149 aa12.26□□□□□ -0.45
CD44-201ENST00000263398 IL13P35225 146 aa12.26□□□□□ -0.45
CD44-201ENST00000263398 TFCP2Q12800 502 aa12.26□□□□□ -0.45
CD44-201ENST00000263398 CCDC91Q7Z6B0 441 aa12.26□□□□□ -0.45
CD44-201ENST00000263398 AOX1Q06278 1338 aa12.26□□□□□ -0.45
CD44-201ENST00000263398 ABCA8O94911 1581 aa12.26□□□□□ -0.45
CD44-201ENST00000263398 MACROD2A1Z1Q3 448 aa12.26□□□□□ -0.45
CD44-201ENST00000263398 CHST3Q7LGC8 479 aa12.26□□□□□ -0.45
CD44-201ENST00000263398 IQSEC3Q9UPP2 1182 aaPredicted RBP12.26□□□□□ -0.45
CD44-201ENST00000263398 DMRT2Q9Y5R5 561 aa12.26□□□□□ -0.45
CD44-201ENST00000263398 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.26□□□□□ -0.45
CD44-201ENST00000263398 YTHDC2Q9H6S0 1430 aaKnown RBP12.26□□□□□ -0.45
CD44-201ENST00000263398 TSPY3P0CV98 308 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 TSPY8P0CW00 308 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 TUBB4BP68371 445 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 PRPF4BQ13523 1007 aaKnown RBP12.25□□□□□ -0.45
CD44-201ENST00000263398 CTNNBL1Q8WYA6 563 aaPredicted RBP12.25□□□□□ -0.45
CD44-201ENST00000263398 DHX58Q96C10 678 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 NBPF6Q5VWK0 638 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 NBPF5PQ86XG9 351 aaPredicted RBP12.25□□□□□ -0.45
CD44-201ENST00000263398 DCAF5Q96JK2 942 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 NBPF4Q96M43 638 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 CABP5Q9NP86 173 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 GCC2Q8IWJ2 1684 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 GCP02774 474 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 RNF187Q5TA31 235 aaPredicted RBP12.25□□□□□ -0.45
CD44-201ENST00000263398 HOOK3Q86VS8 718 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 ERMNQ8TAM6 284 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 RBSNQ9H1K0 784 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 BICC1Q9H694 974 aaKnown RBP12.25□□□□□ -0.45
CD44-201ENST00000263398 IFNKQ9P0W0 207 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 SGSM2O43147 1006 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 TBCAO75347 108 aaKnown RBP12.25□□□□□ -0.45
CD44-201ENST00000263398 CCDC172P0C7W6 258 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 CPA1P15085 419 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 HOXC9P31274 260 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 CEP112Q8N8E3 955 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 IP6K1Q92551 441 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 NGLY1Q96IV0 654 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 TRERF1Q96PN7 1200 aa12.25□□□□□ -0.45
CD44-201ENST00000263398 LIG1P18858 919 aa12.24□□□□□ -0.45
CD44-201ENST00000263398 FAM160A1Q05DH4 1040 aa12.24□□□□□ -0.45
CD44-201ENST00000263398 MAATS1Q7Z4T9 603 aa12.24□□□□□ -0.45
CD44-201ENST00000263398 NLRP3Q96P20 1036 aa12.24□□□□□ -0.45
CD44-201ENST00000263398 ZHX1Q9UKY1 873 aaPredicted RBP12.24□□□□□ -0.45
CD44-201ENST00000263398 RNMTO43148 476 aaKnown RBP12.24□□□□□ -0.45
CD44-201ENST00000263398 TRAF1Q13077 416 aa12.24□□□□□ -0.45
CD44-201ENST00000263398 MCM6Q14566 821 aa12.24□□□□□ -0.45
CD44-201ENST00000263398 HELLSQ9NRZ9 838 aa12.24□□□□□ -0.45
CD44-201ENST00000263398 RNF216Q9NWF9 866 aaPredicted RBP12.24□□□□□ -0.45
CD44-201ENST00000263398 TACC1O75410 805 aa12.24□□□□□ -0.45
CD44-201ENST00000263398 ZNF445P59923 1031 aa12.24□□□□□ -0.45
CD44-201ENST00000263398 ASIC1P78348 528 aa12.24□□□□□ -0.45
CD44-201ENST00000263398 KRT83P78385 493 aa12.24□□□□□ -0.45
CD44-201ENST00000263398 SYCP3Q8IZU3 236 aa12.24□□□□□ -0.45
CD44-201ENST00000263398 GTPBP4Q9BZE4 634 aaKnown RBP12.24□□□□□ -0.45
CD44-201ENST00000263398 CTAGE9A4FU28 777 aa12.23□□□□□ -0.45
CD44-201ENST00000263398 RTL9Q8NET4 1388 aa12.23□□□□□ -0.45
CD44-201ENST00000263398 ATP7AQ04656 1500 aa12.23□□□□□ -0.45
CD44-201ENST00000263398 KRT86O43790 486 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms