RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 LMAN1P49257 510 aa21.31■■□□□ 1
SMARCC1-201ENST00000254480 LRSAM1Q6UWE0 723 aa21.31■■□□□ 1
SMARCC1-201ENST00000254480 ARHGAP45Q92619 1136 aa21.31■■□□□ 1
SMARCC1-201ENST00000254480 SMARCC1Q92922 1105 aaPredicted RBP21.31■■□□□ 1
SMARCC1-201ENST00000254480 TCHPQ9BT92 498 aa21.31■■□□□ 1
SMARCC1-201ENST00000254480 HDAC9Q9UKV0 1011 aa21.31■■□□□ 1
SMARCC1-201ENST00000254480 ZC3H12CQ9C0D7 883 aaKnown RBP21.31■■□□□ 1
SMARCC1-201ENST00000254480 ERMNQ8TAM6 284 aa21.31■■□□□ 1
SMARCC1-201ENST00000254480 FAM89AQ96GI7 184 aa21.31■■□□□ 1
SMARCC1-201ENST00000254480 ALDH1L1O75891 902 aa21.3■■□□□ 1
SMARCC1-201ENST00000254480 F13A1P00488 732 aa21.3■■□□□ 1
SMARCC1-201ENST00000254480 CGNQ9P2M7 1197 aaKnown RBP21.3■■□□□ 1
SMARCC1-201ENST00000254480 NAA15Q9BXJ9 866 aaKnown RBP21.3■■□□□ 1
SMARCC1-201ENST00000254480 ASXL1Q8IXJ9 1541 aa21.3■■□□□ 1
SMARCC1-201ENST00000254480 G2E3Q7L622 706 aa21.3■■□□□ 1
SMARCC1-201ENST00000254480 RTCBQ9Y3I0 505 aaKnown RBP21.3■■□□□ 1
SMARCC1-201ENST00000254480 MAP3K1Q13233 1512 aa21.29■■□□□ 1
SMARCC1-201ENST00000254480 DMRT2Q9Y5R5 561 aa21.29■■□□□ 1
SMARCC1-201ENST00000254480 RNF113AO15541 343 aaKnown RBP21.29■■□□□ 1
SMARCC1-201ENST00000254480 EIF6P56537 245 aaKnown RBP21.29■■□□□ 1
SMARCC1-201ENST00000254480 CREB3L3Q68CJ9 461 aa21.29■■□□□ 1
SMARCC1-201ENST00000254480 DNAI1Q9UI46 699 aa21.29■■□□□ 1
SMARCC1-201ENST00000254480 KCNG4Q8TDN1 519 aa21.29■■□□□ 1
SMARCC1-201ENST00000254480 UIMC1Q96RL1 719 aa21.29■■□□□ 1
SMARCC1-201ENST00000254480 SRRTQ9BXP5 876 aaKnown RBP21.29■■□□□ 1
SMARCC1-201ENST00000254480 RIMS2Q9UQ26 1411 aa21.29■■□□□ 1
SMARCC1-201ENST00000254480 VAMP4O75379 141 aa21.29■■□□□ 1
SMARCC1-201ENST00000254480 SKILP12757 684 aa21.29■■□□□ 1
SMARCC1-201ENST00000254480 TAOK3Q9H2K8 898 aa21.29■■□□□ 1
SMARCC1-201ENST00000254480 HOMER2Q9NSB8 354 aa21.29■■□□□ 1
SMARCC1-201ENST00000254480 RMND1Q9NWS8 449 aa21.29■■□□□ 1
SMARCC1-201ENST00000254480 TIMM10P62072 90 aa21.28■■□□□ 1
SMARCC1-201ENST00000254480 RRP9O43818 475 aaKnown RBP21.28■■□□□ 1
SMARCC1-201ENST00000254480 NEMFO60524 1076 aa21.28■■□□□ 1
SMARCC1-201ENST00000254480 PLCD3Q8N3E9 789 aa21.28■■□□□ 1
SMARCC1-201ENST00000254480 MCM3P25205 808 aa21.28■■□□□ 1
SMARCC1-201ENST00000254480 GPATCH8Q9UKJ3 1502 aaKnown RBP21.28■■□□□ 1
SMARCC1-201ENST00000254480 SMC1AQ14683 1233 aaKnown RBP21.28■■□□□ 1
SMARCC1-201ENST00000254480 TPTE2Q6XPS3 522 aa21.28■■□□□ 1
SMARCC1-201ENST00000254480 TBC1D5Q92609 795 aa21.28■■□□□ 1
SMARCC1-201ENST00000254480 GCP02774 474 aa21.27■■□□□ 1
SMARCC1-201ENST00000254480 TMTC2Q8N394 836 aa21.27■■□□□ 1
SMARCC1-201ENST00000254480 LINS1Q8NG48 757 aa21.27■■□□□ 1
SMARCC1-201ENST00000254480 TTC12Q9H892 705 aaPredicted RBP21.27■■□□□ 1
SMARCC1-201ENST00000254480 GNPATO15228 680 aa21.27■■□□□ 1
SMARCC1-201ENST00000254480 TICAM2Q86XR7 235 aa21.27■■□□□ 1
SMARCC1-201ENST00000254480 PAIP2Q9BPZ3 127 aaKnown RBP21.27■■□□□ 1
SMARCC1-201ENST00000254480 RTL1A6NKG5 1358 aa21.27■■□□□ 1
SMARCC1-201ENST00000254480 TOM1O60784 492 aa21.27■■□□□ 1
SMARCC1-201ENST00000254480 NDUFB9Q9Y6M9 179 aa21.27■■□□□ 1
SMARCC1-201ENST00000254480 SPTLC2O15270 562 aa21.27■□□□□ 0.99
SMARCC1-201ENST00000254480 BTG4Q9NY30 223 aa21.27■□□□□ 0.99
SMARCC1-201ENST00000254480 RALGAPBQ86X10 1494 aa21.26■□□□□ 0.99
SMARCC1-201ENST00000254480 INCENPQ9NQS7 918 aa21.26■□□□□ 0.99
SMARCC1-201ENST00000254480 SEC24BO95487 1268 aa21.26■□□□□ 0.99
SMARCC1-201ENST00000254480 KIAA0753Q2KHM9 967 aa21.26■□□□□ 0.99
SMARCC1-201ENST00000254480 ZNF594Q96JF6 807 aaPredicted RBP21.26■□□□□ 0.99
SMARCC1-201ENST00000254480 CAPZA3Q96KX2 299 aa21.26■□□□□ 0.99
SMARCC1-201ENST00000254480 PTPDC1A2A3K4 754 aa21.26■□□□□ 0.99
SMARCC1-201ENST00000254480 KRT13P13646 458 aa21.26■□□□□ 0.99
SMARCC1-201ENST00000254480 CARD14Q9BXL6 1004 aa21.26■□□□□ 0.99
SMARCC1-201ENST00000254480 UHRF1BP1LA0JNW5 1464 aa21.26■□□□□ 0.99
SMARCC1-201ENST00000254480 URB2Q14146 1524 aaKnown RBP21.26■□□□□ 0.99
SMARCC1-201ENST00000254480 TRIM75PA6NK02 468 aa21.26■□□□□ 0.99
SMARCC1-201ENST00000254480 SPDYE3A6NKU9 549 aa21.26■□□□□ 0.99
SMARCC1-201ENST00000254480 PKNOX2Q96KN3 472 aa21.26■□□□□ 0.99
SMARCC1-201ENST00000254480 PYM1Q9BRP8 204 aaKnown RBP21.26■□□□□ 0.99
SMARCC1-201ENST00000254480 FSD2A1L4K1 749 aa21.25■□□□□ 0.99
SMARCC1-201ENST00000254480 RRP36Q96EU6 259 aaKnown RBP21.25■□□□□ 0.99
SMARCC1-201ENST00000254480 PTPRKQ15262 1439 aa21.25■□□□□ 0.99
SMARCC1-201ENST00000254480 CCDC175P0C221 793 aa21.25■□□□□ 0.99
SMARCC1-201ENST00000254480 OTUD7AQ8TE49 926 aaPredicted RBP21.25■□□□□ 0.99
SMARCC1-201ENST00000254480 KARSQ15046 597 aaKnown RBP21.25■□□□□ 0.99
SMARCC1-201ENST00000254480 C8orf34Q49A92 452 aa21.25■□□□□ 0.99
SMARCC1-201ENST00000254480 LRRC27Q9C0I9 530 aa21.25■□□□□ 0.99
SMARCC1-201ENST00000254480 PARP3Q9Y6F1 533 aa21.25■□□□□ 0.99
SMARCC1-201ENST00000254480 MBD4O95243 580 aa21.25■□□□□ 0.99
SMARCC1-201ENST00000254480 SYT1P21579 422 aa21.25■□□□□ 0.99
SMARCC1-201ENST00000254480 PRIM1P49642 420 aaKnown RBP21.25■□□□□ 0.99
SMARCC1-201ENST00000254480 RAB3GAP1Q15042 981 aa21.24■□□□□ 0.99
SMARCC1-201ENST00000254480 LDHBP07195 334 aaKnown RBP21.24■□□□□ 0.99
SMARCC1-201ENST00000254480 KRT2P35908 639 aa21.24■□□□□ 0.99
SMARCC1-201ENST00000254480 DDX17Q92841 729 aaKnown RBP21.24■□□□□ 0.99
SMARCC1-201ENST00000254480 C6orf50Q9HD87 102 aa21.24■□□□□ 0.99
SMARCC1-201ENST00000254480 LAMC3Q9Y6N6 1575 aa21.24■□□□□ 0.99
SMARCC1-201ENST00000254480 RNMTO43148 476 aaKnown RBP21.24■□□□□ 0.99
SMARCC1-201ENST00000254480 KCNA6P17658 529 aa21.24■□□□□ 0.99
SMARCC1-201ENST00000254480 HOXC9P31274 260 aa21.24■□□□□ 0.99
SMARCC1-201ENST00000254480 ACTN2P35609 894 aa21.24■□□□□ 0.99
SMARCC1-201ENST00000254480 MAP3K5Q99683 1374 aa21.23■□□□□ 0.99
SMARCC1-201ENST00000254480 PSMA7O14818 248 aa21.23■□□□□ 0.99
SMARCC1-201ENST00000254480 EEF2P13639 858 aaKnown RBP21.23■□□□□ 0.99
SMARCC1-201ENST00000254480 GPCPD1Q9NPB8 672 aa21.23■□□□□ 0.99
SMARCC1-201ENST00000254480 WDR7Q9Y4E6 1490 aa21.23■□□□□ 0.99
SMARCC1-201ENST00000254480 GJA3Q9Y6H8 435 aa21.23■□□□□ 0.99
SMARCC1-201ENST00000254480 NF2P35240 595 aa21.23■□□□□ 0.99
SMARCC1-201ENST00000254480 ZNF174Q15697 407 aa21.23■□□□□ 0.99
SMARCC1-201ENST00000254480 NYXQ9GZU5 481 aa21.23■□□□□ 0.99
SMARCC1-201ENST00000254480 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.23■□□□□ 0.997e-11■■■□□ 16.3
SMARCC1-201ENST00000254480 SYCP2Q9BX26 1530 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms