RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 PRDM11Q9NQV5 511 aa19.33■□□□□ 0.69
HOXD3-201ENST00000249440 KCPQ6ZWJ8 1503 aa19.33■□□□□ 0.68
HOXD3-201ENST00000249440 MYH15Q9Y2K3 1946 aa19.33■□□□□ 0.68
HOXD3-201ENST00000249440 E7EWF7 191 aa19.33■□□□□ 0.68
HOXD3-201ENST00000249440 NR1I2O75469 434 aa19.33■□□□□ 0.68
HOXD3-201ENST00000249440 LRRFIP1Q32MZ4 808 aaKnown RBP19.33■□□□□ 0.68
HOXD3-201ENST00000249440 ZNF594Q96JF6 807 aaPredicted RBP19.33■□□□□ 0.68
HOXD3-201ENST00000249440 SPTLC3Q9NUV7 552 aa19.33■□□□□ 0.68
HOXD3-201ENST00000249440 APOBRQ0VD83 1088 aa19.32■□□□□ 0.68
HOXD3-201ENST00000249440 SLFNL1Q499Z3 407 aa19.32■□□□□ 0.68
HOXD3-201ENST00000249440 ANO6Q4KMQ2 910 aa19.32■□□□□ 0.68
HOXD3-201ENST00000249440 PAPPAQ13219 1627 aa19.32■□□□□ 0.68
HOXD3-201ENST00000249440 NUTM2BA6NNL0 878 aaPredicted RBP19.31■□□□□ 0.68
HOXD3-201ENST00000249440 NUTM2EB1AL46 878 aaPredicted RBP19.31■□□□□ 0.68
HOXD3-201ENST00000249440 LUZP1Q86V48 1076 aa19.31■□□□□ 0.68
HOXD3-201ENST00000249440 NUTM2AQ8IVF1 878 aaPredicted RBP19.31■□□□□ 0.68
HOXD3-201ENST00000249440 PRIMPOLQ96LW4 560 aa19.31■□□□□ 0.68
HOXD3-201ENST00000249440 CEP126Q9P2H0 1117 aa19.31■□□□□ 0.68
HOXD3-201ENST00000249440 MAST3O60307 1309 aa19.31■□□□□ 0.68
HOXD3-201ENST00000249440 ADAMTS2O95450 1211 aa19.31■□□□□ 0.68
HOXD3-201ENST00000249440 CCDC57Q2TAC2 916 aa19.31■□□□□ 0.68
HOXD3-201ENST00000249440 PTPDC1A2A3K4 754 aa19.3■□□□□ 0.68
HOXD3-201ENST00000249440 CAVIN2O95810 425 aa19.3■□□□□ 0.68
HOXD3-201ENST00000249440 CCDC158Q5M9N0 1113 aa19.3■□□□□ 0.68
HOXD3-201ENST00000249440 ZNF274Q96GC6 653 aaPredicted RBP19.3■□□□□ 0.68
HOXD3-201ENST00000249440 MAP7D2Q96T17 732 aa19.3■□□□□ 0.68
HOXD3-201ENST00000249440 CBX8Q9HC52 389 aa19.3■□□□□ 0.68
HOXD3-201ENST00000249440 FBXO3Q9UK99 471 aa19.3■□□□□ 0.68
HOXD3-201ENST00000249440 CTDNEP1O95476 244 aa19.3■□□□□ 0.68
HOXD3-201ENST00000249440 IL2RBP14784 551 aa19.3■□□□□ 0.68
HOXD3-201ENST00000249440 RBM10P98175 930 aaKnown RBP19.3■□□□□ 0.68
HOXD3-201ENST00000249440 ATL3Q6DD88 541 aa19.3■□□□□ 0.68
HOXD3-201ENST00000249440 SPC24Q8NBT2 197 aa19.3■□□□□ 0.68
HOXD3-201ENST00000249440 FAM13BQ9NYF5 915 aa19.3■□□□□ 0.68
HOXD3-201ENST00000249440 KIAA1524Q8TCG1 905 aa19.29■□□□□ 0.68
HOXD3-201ENST00000249440 PUS3Q9BZE2 481 aaKnown RBP19.29■□□□□ 0.68
HOXD3-201ENST00000249440 AKAP2Q9Y2D5 859 aa19.29■□□□□ 0.68
HOXD3-201ENST00000249440 CCT2P78371 535 aaKnown RBP19.29■□□□□ 0.68
HOXD3-201ENST00000249440 ISCA1Q9BUE6 129 aa19.29■□□□□ 0.68
HOXD3-201ENST00000249440 RCOR1Q9UKL0 485 aa19.29■□□□□ 0.68
HOXD3-201ENST00000249440 ADD1P35611 737 aaKnown RBP19.28■□□□□ 0.68
HOXD3-201ENST00000249440 FKBP4Q02790 459 aaKnown RBP eCLIP19.28■□□□□ 0.68
HOXD3-201ENST00000249440 GORABQ5T7V8 394 aa19.28■□□□□ 0.68
HOXD3-201ENST00000249440 MYRIPQ8NFW9 859 aa19.28■□□□□ 0.68
HOXD3-201ENST00000249440 KCNF1Q9H3M0 494 aa19.28■□□□□ 0.68
HOXD3-201ENST00000249440 ZFYP08048 801 aaPredicted RBP19.28■□□□□ 0.68
HOXD3-201ENST00000249440 PDIA3P30101 505 aaKnown RBP19.28■□□□□ 0.68
HOXD3-201ENST00000249440 HSPA1LP34931 641 aa19.28■□□□□ 0.68
HOXD3-201ENST00000249440 ZNF165P49910 485 aa19.28■□□□□ 0.68
HOXD3-201ENST00000249440 TCIRG1Q13488 830 aa19.28■□□□□ 0.68
HOXD3-201ENST00000249440 FBXL16Q8N461 479 aa19.28■□□□□ 0.68
HOXD3-201ENST00000249440 CTNNA3Q9UI47 895 aa19.28■□□□□ 0.68
HOXD3-201ENST00000249440 COL5A2P05997 1499 aaPredicted RBP19.27■□□□□ 0.68
HOXD3-201ENST00000249440 SALL1Q9NSC2 1324 aa19.27■□□□□ 0.68
HOXD3-201ENST00000249440 CEBPZQ03701 1054 aaKnown RBP19.27■□□□□ 0.68
HOXD3-201ENST00000249440 TTC39AQ5SRH9 613 aa19.27■□□□□ 0.68
HOXD3-201ENST00000249440 C17orf53Q8N3J3 647 aaPredicted RBP19.27■□□□□ 0.68
HOXD3-201ENST00000249440 TDRD7Q8NHU6 1098 aaKnown RBP19.27■□□□□ 0.68
HOXD3-201ENST00000249440 ZNF396Q96N95 335 aaPredicted RBP19.27■□□□□ 0.68
HOXD3-201ENST00000249440 NAP1L2Q9ULW6 460 aaPredicted RBP19.27■□□□□ 0.68
HOXD3-201ENST00000249440 TNS2Q63HR2 1409 aa19.27■□□□□ 0.68
HOXD3-201ENST00000249440 M0R2C6 588 aa19.26■□□□□ 0.67
HOXD3-201ENST00000249440 CTAGE5O15320 804 aa19.26■□□□□ 0.67
HOXD3-201ENST00000249440 MTERF4Q7Z6M4 381 aaKnown RBP19.26■□□□□ 0.67
HOXD3-201ENST00000249440 OSBP2Q969R2 916 aa19.26■□□□□ 0.67
HOXD3-201ENST00000249440 CARD10Q9BWT7 1032 aa19.26■□□□□ 0.67
HOXD3-201ENST00000249440 STRN4Q9NRL3 753 aa19.26■□□□□ 0.67
HOXD3-201ENST00000249440 A0A0G2JLW4 131 aa19.26■□□□□ 0.67
HOXD3-201ENST00000249440 TRIM28Q13263 835 aaKnown RBP19.26■□□□□ 0.67
HOXD3-201ENST00000249440 COL22A1Q8NFW1 1626 aaPredicted RBP19.25■□□□□ 0.67
HOXD3-201ENST00000249440 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.25■□□□□ 0.67
HOXD3-201ENST00000249440 XAGE2Q96GT9 111 aa19.25■□□□□ 0.67
HOXD3-201ENST00000249440 DNAJC25Q9H1X3 360 aa19.25■□□□□ 0.67
HOXD3-201ENST00000249440 NCOA5Q9HCD5 579 aaKnown RBP19.25■□□□□ 0.67
HOXD3-201ENST00000249440 EVCP57679 992 aa19.25■□□□□ 0.67
HOXD3-201ENST00000249440 IMMTQ16891 758 aaKnown RBP19.25■□□□□ 0.67
HOXD3-201ENST00000249440 CHST3Q7LGC8 479 aa19.25■□□□□ 0.67
HOXD3-201ENST00000249440 TRIM5Q9C035 493 aa19.25■□□□□ 0.67
HOXD3-201ENST00000249440 WASHC4Q2M389 1173 aa19.24■□□□□ 0.67
HOXD3-201ENST00000249440 TTLL5Q6EMB2 1281 aa19.24■□□□□ 0.67
HOXD3-201ENST00000249440 CCAR1Q8IX12 1150 aaKnown RBP19.24■□□□□ 0.67
HOXD3-201ENST00000249440 PYCARDQ9ULZ3 195 aa19.24■□□□□ 0.67
HOXD3-201ENST00000249440 SHANK3Q9BYB0 1731 aa19.24■□□□□ 0.67
HOXD3-201ENST00000249440 FOSBP53539 338 aa19.24■□□□□ 0.67
HOXD3-201ENST00000249440 TAF7LQ5H9L4 462 aa19.24■□□□□ 0.67
HOXD3-201ENST00000249440 PLA2G4DQ86XP0 818 aa19.24■□□□□ 0.67
HOXD3-201ENST00000249440 DRC7Q8IY82 874 aa19.24■□□□□ 0.67
HOXD3-201ENST00000249440 USP28Q96RU2 1077 aa19.24■□□□□ 0.67
HOXD3-201ENST00000249440 PCCAP05165 728 aaPredicted RBP19.23■□□□□ 0.67
HOXD3-201ENST00000249440 CCDC73Q6ZRK6 1079 aa19.23■□□□□ 0.67
HOXD3-201ENST00000249440 PLA2G12BQ9BX93 195 aa19.23■□□□□ 0.67
HOXD3-201ENST00000249440 TEX13AQ9BXU3 409 aaPredicted RBP19.23■□□□□ 0.67
HOXD3-201ENST00000249440 ZNF330Q9Y3S2 320 aaPredicted RBP19.23■□□□□ 0.67
HOXD3-201ENST00000249440 CARMIL3Q8ND23 1372 aa19.23■□□□□ 0.67
HOXD3-201ENST00000249440 ABCC12Q96J65 1359 aa19.23■□□□□ 0.67
HOXD3-201ENST00000249440 ZNF75DP51815 510 aa19.23■□□□□ 0.67
HOXD3-201ENST00000249440 KIF6Q6ZMV9 814 aa19.23■□□□□ 0.67
HOXD3-201ENST00000249440 BTG4Q9NY30 223 aa19.23■□□□□ 0.67
HOXD3-201ENST00000249440 TMOD3Q9NYL9 352 aa19.23■□□□□ 0.67
HOXD3-201ENST00000249440 DHX16O60231 1041 aaKnown RBP19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms