RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Adck5Q80V03 582 aa17.85■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Vps37dQ810I0 261 aa17.85■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Slc1a4O35874 532 aa17.85■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Hspa2P17156 633 aa17.85■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Sptlc2P97363 560 aaKnown RBP17.85■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Txndc16Q7TN22 820 aa17.85■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Sgsm2Q80U12 1005 aa17.85■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Ttll7A4Q9F0 912 aa17.84■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Api5O35841 504 aaKnown RBP17.84■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Znf18Q810A1 556 aa17.84■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Pik3ap1Q9EQ32 811 aa17.84■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Brms1Q99N20 246 aa17.84■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Trim30cD3YVI9 513 aa17.84■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Sde2Q8K1J5 448 aaKnown RBP17.84■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Ankrd1Q9CR42 319 aa17.84■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Atp7bQ64446 1462 aa17.84■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Plcd1Q8R3B1 756 aa17.84■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Baiap2l1Q9DBJ3 514 aa17.84■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Atp8b3Q6UQ17 1335 aa17.83■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Tbc1d8bA3KGB4 1114 aa17.83■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Maats1Q8BRC6 783 aa17.83■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 TsksO54887 585 aa17.83■□□□□ 0.45
Ccdc88b-201ENSMUST00000113440 Gm29094F6Q785 221 aa17.83■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Gzf1Q4VBD9 706 aa17.83■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Acnat2Q8BGG9 420 aa17.83■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Dis3l2Q8CI75 870 aaKnown RBP17.83■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Lrrc2Q8VDB8 371 aa17.83■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 PtpruB1AUH1 1446 aa17.83■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Ahdc1Q6PAL7 1594 aaKnown RBP17.83■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Cep170bQ80U49 1574 aa17.83■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Leo1Q5XJE5 667 aa17.83■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 CenphQ9QYM8 241 aa17.83■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Prdm1Q60636 856 aa17.82■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Abcf1Q6P542 837 aaKnown RBP17.82■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Abtb2Q7TQI7 1024 aa17.82■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Emilin2Q8K482 1074 aa17.82■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Ccdc94Q9D6J3 314 aa17.82■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Setd1bQ8CFT2 1985 aa17.82■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Lrrfip1Q3UZ39 729 aaKnown RBP17.82■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Krt23Q99PS0 422 aa17.82■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Kiaa0556Q8C753 1610 aa17.82■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 LarsQ8BMJ2 1178 aa17.82■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Slc13a4Q8BZ82 625 aa17.82■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Qtrt2B8ZXI1 415 aa17.82■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Ces1aE9PYP1 563 aa17.82■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Gm42641I6L9G2 585 aa17.82■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 AtripQ8BMG1 785 aa17.82■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Dydc2Q9D3X8 139 aa17.82■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Commd10Q8JZY2 202 aa17.81■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Irs4Q9Z0Y7 1216 aa17.81■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Fndc1E9Q043 1732 aa17.81■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 DlatQ8BMF4 642 aa17.81■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Col1a2Q01149 1372 aa17.81■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Ugt1a5B2RT14 529 aa17.81■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Cep135Q6P5D4 1140 aa17.81■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Cyp2d12Q8BVD2 504 aa17.81■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Ktn1Q61595 1327 aaKnown RBP17.81■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Kidins220E9Q9B7 1793 aa17.81■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Pkp1P97350 728 aaKnown RBP17.81■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 CpvlQ9D3S9 478 aa17.81■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Tbc1d8Q9Z1A9 1134 aa17.81■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Trap1aP19473 224 aa17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Pafah1b1P63005 410 aaKnown RBP17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Terf1P70371 421 aa17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Tmem119Q8R138 280 aa17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Ccdc181Q80ZU5 509 aa17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Ttc5Q99LG4 440 aa17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 AceP09470 1312 aa17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Myl3P09542 204 aa17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Ift122Q6NWV3 1182 aa17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Me3Q8BMF3 604 aa17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Aox1O54754 1333 aa17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Prex1Q69ZK0 1650 aa17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 1700006A11RikB9EHI3 544 aa17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Ccdc162pQ0VG85 912 aa17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Ano8Q6PB70 1060 aa17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Tbc1d5Q80XQ2 815 aa17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Cdan1Q8CC12 1239 aa17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Kif2cQ922S8 721 aa17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 St5Q924W7 1134 aa17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Acot9Q9R0X4 439 aaKnown RBP17.8■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 TrdnE9Q9K5 693 aa17.79■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Usp5P56399 858 aaKnown RBP17.79■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Igf2bp2Q5SF07 592 aaKnown RBP17.79■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Ifit1Q64282 463 aa17.79■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Snw1Q9CSN1 536 aaKnown RBP17.79■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Cnpy2Q9QXT0 182 aa17.79■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Homer1Q9Z2Y3 366 aa17.79■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Myl10Q62082 202 aa17.79■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Zscan25B2RX31 543 aa17.79■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 MycnP03966 462 aaKnown RBP17.79■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Gnat2P50149 354 aa17.79■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Tbc1d2bQ3U0J8 965 aa17.79■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Jakmip3Q5DTN8 844 aa17.79■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Olfm5Q8BU90 496 aa17.79■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Mast3Q3U214 1321 aa17.79■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Tns3Q5SSZ5 1440 aa17.78■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Kifc2O08672 792 aa17.78■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Zhx1P70121 873 aa17.78■□□□□ 0.44
Ccdc88b-201ENSMUST00000113440 Lrrc45Q8CIM1 670 aa17.78■□□□□ 0.44
Retrieved 100 of 22,080 RNA–protein pairs in 15 ms