RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 GAGE12IP0CL82 117 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 SLC18A1P54219 525 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 CTBP2P56545 445 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 GAGE4Q13068 117 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 BHLHA15Q7RTS1 189 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-221ENST00000641996 TCF24Q7RTU0 167 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 SERPINA11Q86U17 422 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 GPSM1Q86YR5 675 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 CILP2Q8IUL8 1156 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 ATOH7Q8N100 152 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 CLDN22Q8N7P3 220 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 FBXO25Q8TCJ0 367 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 ABHD17AQ96GS6 310 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 NOX3Q9HBY0 568 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 UBE2TQ9NPD8 197 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-221ENST00000641996 EXO1Q9UQ84 846 aaKnown RBP3.21□□□□□ -1.9
SCN1A-221ENST00000641996 KDM5BQ9UGL1 1544 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 CST1P01037 141 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 TFAP2AP05549 437 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 HKR1P10072 659 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 MRPS11P82912 194 aaKnown RBP3.21□□□□□ -1.9
SCN1A-221ENST00000641996 PLXDC2Q6UX71 529 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 CXorf67Q86X51 503 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-221ENST00000641996 OR2T4Q8NH00 348 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 ART4Q93070 314 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 CEP152O94986 1710 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 ZFYVE26Q68DK2 2539 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 SMIM9A6NGZ8 99 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 CASTOR2A6NHX0 329 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 TRDCB7Z8K6 153 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 H3BS24 57 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 H1F0P07305 194 aaKnown RBP3.21□□□□□ -1.9
SCN1A-221ENST00000641996 CD40P25942 277 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 CD38P28907 300 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 G6PCP35575 357 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 SLC7A9P82251 487 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 CCSMST1Q4G0I0 132 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 OR5R1Q8NH85 324 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 WBP2Q969T9 261 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 OR2V2Q96R30 315 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 IL21Q9HBE4 155 aa3.21□□□□□ -1.9
SCN1A-221ENST00000641996 SCN11AQ9UI33 1791 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 FEZF1A0PJY2 475 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 CORTO00230 105 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 EWSR1Q01844 656 aaKnown RBP eCLIP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 SPATA45Q537H7 98 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 FAHD1Q6P587 224 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 C5orf17Q8NAS9 161 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 MMP17Q9ULZ9 603 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 YIPF1Q9Y548 306 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 NKX2-6A6NCS4 301 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 H0YIG0 161 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 ACP5P13686 325 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 MALP21145 153 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF83P51522 516 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 CLRN1P58418 232 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 C3AR1Q16581 482 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF74Q16587 644 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 GUCA2BQ16661 112 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 AMMECR1LQ6DCA0 310 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 UBE3DQ7Z6J8 389 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 TOMM5Q8N4H5 51 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 STARD4Q96DR4 205 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 KCTD15Q96SI1 283 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 DNMT3BQ9UBC3 853 aaKnown RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 OSGIN1Q9UJX0 560 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 LSM7Q9UK45 103 aaKnown RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 DNMBPQ6XZF7 1577 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 H7C417 338 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 J3QR06 171 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 HYAL3O43820 417 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 TNFSF15O95150 251 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 NFYAP23511 347 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 KIR2DL1P43626 348 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 SSBP2P81877 361 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 PRDX4Q13162 271 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 ANXA2RQ3ZCQ2 193 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF585BQ52M93 769 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 FBXW9Q5XUX1 488 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 APOBEC3FQ8IUX4 373 aaKnown RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 ZBP1Q9H171 429 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 CLDN24A6NM45 220 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 PRSS46E5RG02 174 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 SRPX2O60687 465 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-221ENST00000641996 CHRM4P08173 479 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 CD37P11049 281 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 CPOXP36551 454 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 FUT6P51993 359 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 CYP1B1Q16678 543 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 DPPA3Q6W0C5 159 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 SPPL2CQ8IUH8 684 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 P2RX2Q9UBL9 471 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 CBLCQ9ULV8 474 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 RAI2Q9Y5P3 530 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 C2CD3Q4AC94 2353 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 KLF18A0A0U1RQI7 1052 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 OR2A25A4D2G3 310 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 DCTN6O00399 190 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 NKX2-8O15522 239 aa3.2□□□□□ -1.9
SCN1A-221ENST00000641996 NGFP01138 241 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms