RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 KLF3P57682 345 aaPredicted RBP8.44□□□□□ -1.06
CLN3-261ENST00000637686 SELENOVP59797 346 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 PPP1CBP62140 327 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 TNK1Q13470 666 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 TAF13Q15543 124 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 SSX1Q16384 188 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 TSTQ16762 297 aaKnown RBP8.44□□□□□ -1.06
CLN3-261ENST00000637686 ALKBH6Q3KRA9 238 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 YIF1BQ5BJH7 314 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 ARL9Q6T311 187 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 UNQ6126/PRO20091Q6UXV3 157 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 RFPL4BQ6ZWI9 263 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 SATL1Q86VE3 508 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 CATSPERDQ86XM0 798 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 C1orf174Q8IYL3 243 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 CIARTQ8N365 385 aaPredicted RBP8.44□□□□□ -1.06
CLN3-261ENST00000637686 ZNF525Q8N782 197 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 SLC25A40Q8TBP6 338 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 MARS2Q96GW9 593 aaKnown RBP8.44□□□□□ -1.06
CLN3-261ENST00000637686 PGLYRP3Q96LB9 341 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 OR2J1Q9GZK6 312 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 RAB1BQ9H0U4 201 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 TPK1Q9H3S4 243 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 DLL4Q9NR61 685 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 CENPMQ9NSP4 180 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 FAM206AQ9NX38 181 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 TAAR3PQ9P1P4 343 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 NUFIP1Q9UHK0 495 aaKnown RBP8.44□□□□□ -1.06
CLN3-261ENST00000637686 ENPP5Q9UJA9 477 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 FBXO9Q9UK97 447 aaPredicted RBP8.44□□□□□ -1.06
CLN3-261ENST00000637686 SF3B6Q9Y3B4 125 aaKnown RBP8.44□□□□□ -1.06
CLN3-261ENST00000637686 HIVEP1P15822 2718 aa8.44□□□□□ -1.06
CLN3-261ENST00000637686 IGLV3-9A0A075B6K5 115 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 A0A0U1RQV5 110 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 TMEM269A0A1B0GVZ9 245 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 TRDV1A0A1B0GX56 115 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 OR4C45A6NMZ5 311 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 F5H5K5 113 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 LOC110117498-PIK3R3F6TDL0 507 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 M0R135 149 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 M0R233 179 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 SMAD7O15105 426 aaKnown RBP8.43□□□□□ -1.06
CLN3-261ENST00000637686 GATBO75879 557 aaKnown RBP8.43□□□□□ -1.06
CLN3-261ENST00000637686 UBCP0CG48 685 aaKnown RBP8.43□□□□□ -1.06
CLN3-261ENST00000637686 HSMCR30P0CW71 290 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 NAT2P11245 290 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 CELP19835 753 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 TUBG1P23258 451 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 GCH1P30793 250 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 FGF9P31371 208 aaPredicted RBP8.43□□□□□ -1.06
CLN3-261ENST00000637686 RSPO1Q2MKA7 263 aaPredicted RBP8.43□□□□□ -1.06
CLN3-261ENST00000637686 ZNF718Q3SXZ3 478 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 TMEM255AQ5JRV8 349 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 TMEM244Q5VVB8 128 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 DNM1P46Q6ZS02 220 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 Q6ZSR3 168 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 PRSS45Q7RTY3 260 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 ELMOD2Q8IZ81 293 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 OR52H1Q8NGJ2 320 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 KLF14Q8TD94 323 aaPredicted RBP8.43□□□□□ -1.06
CLN3-261ENST00000637686 TMIGD2Q96BF3 282 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 ZNF799Q96GE5 643 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 FUNDC2Q9BWH2 189 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 COMMD4Q9H0A8 199 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 MS4A5Q9H3V2 200 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 POFUT1Q9H488 388 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 RGCCQ9H4X1 137 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 G6PC2Q9NQR9 355 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 TUBG2Q9NRH3 451 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 TBCCD1Q9NVR7 557 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 STUB1Q9UNE7 303 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 ZNF281Q9Y2X9 895 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 STARD10Q9Y365 291 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 CEPT1Q9Y6K0 416 aa8.43□□□□□ -1.06
CLN3-261ENST00000637686 MED13LQ71F56 2210 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 F8P00451 2351 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 IGHV4-30-2A0A087WSY4 118 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 TRBV2A0A0J9YWF9 115 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 DHRS7CA6NNS2 312 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 E9PI62 339 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 SLC22A1O15245 554 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 NOL3O60936 208 aaKnown RBP8.42□□□□□ -1.06
CLN3-261ENST00000637686 SC5DO75845 299 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 IGLV3-1P01715 115 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 IGHV3-13P01766 116 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 ERCC1P07992 297 aaPredicted RBP8.42□□□□□ -1.06
CLN3-261ENST00000637686 ACSM4P0C7M7 580 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 ZNF12P17014 697 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 ACHEP22303 614 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 CCL1P22362 96 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 CFL1P23528 166 aaKnown RBP8.42□□□□□ -1.06
CLN3-261ENST00000637686 CX3CR1P49238 355 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 NANOS3P60323 173 aaKnown RBP8.42□□□□□ -1.06
CLN3-261ENST00000637686 DOC2BQ14184 412 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 NKPD1Q17RQ9 610 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 BCL2L15Q5TBC7 163 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 LIPKQ5VXJ0 399 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 MBNL2Q5VZF2 373 aaKnown RBP8.42□□□□□ -1.06
CLN3-261ENST00000637686 CLEC2AQ6UVW9 174 aa8.42□□□□□ -1.06
CLN3-261ENST00000637686 COLCA1Q6ZS62 124 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms