RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 NDUFA2O43678 99 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 GPR137BO60478 399 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 LHBP01229 141 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 HSD17B1P14061 328 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 ENTPD1P49961 510 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 DLX1P56177 255 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 CRMP1Q14194 572 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 PDCD1Q15116 288 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 RHOUQ7L0Q8 258 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 TMEM86BQ8N661 226 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 SPERTQ8NA61 448 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 OR8S1Q8NH09 359 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 TBC1D15Q8TC07 691 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 LRRC29Q8WV35 223 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 SEMA6AQ9H2E6 1030 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 CNTD2Q9H8S5 307 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 TRIM36Q9NQ86 728 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 TBC1D23Q9NUY8 699 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 C14orf119Q9NWQ9 140 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 LYVE1Q9Y5Y7 322 aa13.33□□□□□ -0.28
CLN3-246ENST00000636228 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.32□□□□□ -0.28
CLN3-246ENST00000636228 A0A1W2PRD5 423 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 A0A1W2PRF3 423 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 A0A1W2PRM7 423 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 SPI1P17947 270 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 FMO3P31513 532 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 GMFBP60983 142 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 CSNK2BP67870 215 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 FAM3AP98173 230 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 PCK2Q16822 640 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 SAMD4BQ5PRF9 694 aaKnown RBP13.32□□□□□ -0.28
CLN3-246ENST00000636228 TEX36Q5VZQ5 186 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 CYP2R1Q6VVX0 501 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 SLC16A9Q7RTY1 509 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 VMO1Q7Z5L0 202 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 PIP4P2Q8N4L2 257 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 OR4Q3Q8NH05 313 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 LINC01006Q8NI28 216 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 DYRK2Q92630 601 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 SGK3Q96BR1 496 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 TSSK6Q9BXA6 273 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 IL20Q9NYY1 176 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 ONECUT1Q9UBC0 465 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 RPUSD1Q9UJJ7 312 aaKnown RBP13.32□□□□□ -0.28
CLN3-246ENST00000636228 RNF114Q9Y508 228 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 POMT1Q9Y6A1 747 aa13.32□□□□□ -0.28
CLN3-246ENST00000636228 DHRS12A0PJE2 317 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 ANKRD30BLA7E2S9 258 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 SOX14O95416 240 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 TFF1P04155 84 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 ANXA2P07355 339 aaKnown RBP13.31□□□□□ -0.28
CLN3-246ENST00000636228 IER3P46695 156 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 CX3CR1P49238 355 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 HMGA2P52926 109 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 EIF2B1Q14232 305 aaKnown RBP13.31□□□□□ -0.28
CLN3-246ENST00000636228 GFOD2Q3B7J2 385 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 WDR38Q5JTN6 314 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 ASPHD2Q6ICH7 369 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 ZNF770Q6IQ21 691 aaPredicted RBP13.31□□□□□ -0.28
CLN3-246ENST00000636228 RASSF6Q6ZTQ3 369 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 DPY19L4Q7Z388 723 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 PGAM4Q8N0Y7 254 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 FAM216BQ8N7L0 139 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 OR1M1Q8NGA1 313 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 OR5T2Q8NGG2 359 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 OR4C15Q8NGM1 316 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 OR6K6Q8NGW6 343 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 SPSB4Q96A44 273 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 NMNAT2Q9BZQ4 307 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 MED20Q9H944 212 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 BRD7Q9NPI1 651 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 ARL8BQ9NVJ2 186 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 ARMC1Q9NVT9 282 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 DNAJC27Q9NZQ0 273 aa13.31□□□□□ -0.28
CLN3-246ENST00000636228 ZNF878C9JN71 531 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 ACOT8O14734 319 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 XRCC2O43543 280 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 SNX3O60493 162 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 KRT36O76013 467 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 CCNB2O95067 398 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 MZT1Q08AG7 82 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 IKZF1Q13422 519 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 TIGD6Q17RP2 521 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 MICBQ29980 383 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 CDONQ4KMG0 1287 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 RPL13AP3Q6NVV1 102 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 WDR82Q6UXN9 313 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 FAM57BQ71RH2 274 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 AQP11Q8NBQ7 271 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 REEP6Q96HR9 211 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 RBM4BQ9BQ04 359 aaKnown RBP13.3□□□□□ -0.28
CLN3-246ENST00000636228 SIRT7Q9NRC8 400 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 VNN3Q9NY84 501 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 FAM53CQ9NYF3 392 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 ZNF319Q9P2F9 582 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 KAAG1Q9UBP8 84 aa13.3□□□□□ -0.28
CLN3-246ENST00000636228 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.29□□□□□ -0.28
CLN3-246ENST00000636228 M0QZ24 198 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 CDIPTO14735 213 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 ECDO95905 644 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms