RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 CASTOR1Q8WTX7 329 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 RASL10BQ96S79 203 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 ZNF471Q9BX82 626 aaPredicted RBP11.27□□□□□ -0.61
LINC00540-203ENST00000631321 TMEM59Q9BXS4 323 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.27□□□□□ -0.61
LINC00540-203ENST00000631321 MBD2Q9UBB5 411 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 SHPKQ9UHJ6 478 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 GPR132Q9UNW8 380 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 U3KQA8 63 aa11.27□□□□□ -0.61
LINC00540-203ENST00000631321 A0A1W2PQM1 296 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 FAM25EA8MYX2 175 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 TSPAN4O14817 238 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 RAMP1O60894 148 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 GP1BAP07359 652 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 SLC2A1P11166 492 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 PRF1P14222 555 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 PSMB6P28072 239 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 CBX5P45973 191 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 LSM6P62312 80 aaKnown RBP11.26□□□□□ -0.61
LINC00540-203ENST00000631321 PPIAP62937 165 aaKnown RBP11.26□□□□□ -0.61
LINC00540-203ENST00000631321 SNTB1Q13884 538 aaKnown RBP11.26□□□□□ -0.61
LINC00540-203ENST00000631321 TMEM128Q5BJH2 165 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 CARD17Q5XLA6 110 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 GUSBP11Q6P575 273 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 INO80EQ8NBZ0 244 aaPredicted RBP11.26□□□□□ -0.61
LINC00540-203ENST00000631321 STOML3Q8TAV4 291 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 TMEM41AQ96HV5 264 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 ARPC5LQ9BPX5 153 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 UBE2ZQ9H832 354 aaPredicted RBP11.26□□□□□ -0.61
LINC00540-203ENST00000631321 IGKV1-9A0A0C4DH69 117 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 IGHV5-10-1A0A0J9YXX1 117 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 ZNF726A6NNF4 738 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 F8VVB4 439 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 F8VWA3 439 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 RAD51DO75771 328 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 SERPINF1P36955 418 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 ALDH3B1P43353 468 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 SLC35A1P78382 337 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 CYCSP99999 105 aaKnown RBP11.26□□□□□ -0.61
LINC00540-203ENST00000631321 ATXN7L3Q14CW9 347 aaPredicted RBP11.26□□□□□ -0.61
LINC00540-203ENST00000631321 SMAD2Q15796 467 aaKnown RBP11.26□□□□□ -0.61
LINC00540-203ENST00000631321 LCN10Q6JVE6 187 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 KCTD9Q7L273 389 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 PEG10Q86TG7 708 aaKnown RBP11.26□□□□□ -0.61
LINC00540-203ENST00000631321 TMEM17Q86X19 198 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 COMMD2Q86X83 199 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 OR4K17Q8NGC6 315 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 ZC3H10Q96K80 434 aaKnown RBP11.26□□□□□ -0.61
LINC00540-203ENST00000631321 FAM71F1Q96KD3 344 aaPredicted RBP11.26□□□□□ -0.61
LINC00540-203ENST00000631321 CDC6Q99741 560 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 DUSP23Q9BVJ7 150 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 FAM117AQ9C073 453 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 C5orf66Q9H5L9 145 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 GHRLQ9UBU3 117 aa11.26□□□□□ -0.61
LINC00540-203ENST00000631321 CHCHD2Q9Y6H1 151 aaPredicted RBP11.26□□□□□ -0.61
LINC00540-203ENST00000631321 TEX13DA0A0J9YY54 714 aaPredicted RBP11.25□□□□□ -0.61
LINC00540-203ENST00000631321 FOXI3A8MTJ6 420 aaPredicted RBP11.25□□□□□ -0.61
LINC00540-203ENST00000631321 TLX3O43711 291 aaPredicted RBP11.25□□□□□ -0.61
LINC00540-203ENST00000631321 WDPCPO95876 746 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 ATF4P18848 351 aaPredicted RBP11.25□□□□□ -0.61
LINC00540-203ENST00000631321 ZNF133P52736 654 aaPredicted RBP11.25□□□□□ -0.61
LINC00540-203ENST00000631321 CCL7P80098 99 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 ECH1Q13011 328 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 TMEM176BQ3YBM2 270 aaPredicted RBP11.25□□□□□ -0.61
LINC00540-203ENST00000631321 NSUN5P2Q63ZY6 315 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 MRPL14Q6P1L8 145 aaKnown RBP11.25□□□□□ -0.61
LINC00540-203ENST00000631321 FAM57BQ71RH2 274 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 ZNF283Q8N7M2 679 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 TMEM230Q96A57 120 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 SHDQ96IW2 340 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 URM1Q9BTM9 101 aaKnown RBP11.25□□□□□ -0.61
LINC00540-203ENST00000631321 DEFB126Q9BYW3 111 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 BANF2Q9H503 90 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 CHMP1AQ9HD42 196 aaPredicted RBP11.25□□□□□ -0.61
LINC00540-203ENST00000631321 LAMA1P25391 3075 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 CABIN1Q9Y6J0 2220 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 A0A087WZY1 265 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 EEF1E1-BLOC1S5C9J1V9 151 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 F5H0A9 414 aaPredicted RBP11.25□□□□□ -0.61
LINC00540-203ENST00000631321 K7ESF4 209 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 SFT2D2O95562 160 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 HCKP08631 526 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 NR2C1P13056 603 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 KLK2P20151 261 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 FPR2P25090 351 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 EPHA8P29322 1005 aaPredicted RBP11.25□□□□□ -0.61
LINC00540-203ENST00000631321 H3F3AP84243 136 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 BEX5Q5H9J7 111 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 CRIP3Q6Q6R5 217 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 UQCC3Q6UW78 93 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 Q6ZSR3 168 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 TMPPEQ6ZT21 453 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 FOXL2NBQ6ZUU3 175 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 LHFPL1Q86WI0 220 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 GTPBP8Q8N3Z3 284 aaPredicted RBP11.25□□□□□ -0.61
LINC00540-203ENST00000631321 OR5AP2Q8NGF4 316 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 OR52H1Q8NGJ2 320 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 PIK3IP1Q96FE7 263 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 ARHGAP5-AS1Q96IT6 56 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 SCGB3A2Q96PL1 93 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms