RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 LRFN1Q9P244 771 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 MGAQ8IWI9 3026 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 METTL21EPA6NDL7 271 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 TTLL8A6PVC2 850 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 B8ZZF3 427 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 RGS19P49795 217 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 ZNF626Q68DY1 528 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 HDDC2Q7Z4H3 204 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 TRAPPC6BQ86SZ2 158 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 GGNQ86UU5 652 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 OR10D3Q8NH80 312 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 SIGLEC12Q96PQ1 595 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 TAAR9Q96RI9 348 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 SLC17A5Q9NRA2 495 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 PIPOXQ9P0Z9 390 aa9.34□□□□□ -0.91
CUX1-221ENST00000622516 SVILO95425 2214 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 LOC102725191A0A1B0GVB3 256 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 ZNF736B4DX44 427 aaPredicted RBP9.33□□□□□ -0.92
CUX1-221ENST00000622516 SOCS1O15524 211 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 NOS1APO75052 506 aaPredicted RBP9.33□□□□□ -0.92
CUX1-221ENST00000622516 CD96P40200 585 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 H2BFSP57053 126 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 TSPAN5P62079 268 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 POLR2GP62487 172 aaKnown RBP eCLIP9.33□□□□□ -0.92
CUX1-221ENST00000622516 SNAI3Q3KNW1 292 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 C9orf135Q5VTT2 229 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 DCAF12L2Q5VW00 463 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 CDCP2Q5VXM1 449 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 SLC36A1Q7Z2H8 476 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 GJC3Q8NFK1 279 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 TMEM41AQ96HV5 264 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 SLC6A7Q99884 636 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 IL17BQ9UHF5 180 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 SCP2D1Q9UJQ7 156 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 RAB22AQ9UL26 194 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 OTOGLQ3ZCN5 2332 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 COL27A1Q8IZC6 1860 aaPredicted RBP9.33□□□□□ -0.92
CUX1-221ENST00000622516 A0A0A6YYD4 124 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 PCP4L1A6NKN8 68 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 PRAF2O60831 178 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 CD37P11049 281 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 ICAM2P13598 275 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 FKBP2P26885 142 aaKnown RBP9.33□□□□□ -0.92
CUX1-221ENST00000622516 TAS2R19P59542 299 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 ACTBP60709 375 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 ACTG1P63261 375 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 QRFPP83859 136 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 ZNF239Q16600 458 aaKnown RBP9.33□□□□□ -0.92
CUX1-221ENST00000622516 ZNF260Q3ZCT1 412 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 ZNF774Q6NX45 483 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 BPIFB2Q8N4F0 458 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 AKR7LQ8NHP1 331 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 TNFAIP8L1Q8WVP5 186 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 TMEM54Q969K7 222 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 PIGTQ969N2 578 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 INTS12Q96CB8 462 aaKnown RBP9.33□□□□□ -0.92
CUX1-221ENST00000622516 MRPS28Q9Y2Q9 187 aaKnown RBP9.33□□□□□ -0.92
CUX1-221ENST00000622516 FLVCR1Q9Y5Y0 555 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 KIAA1549Q9HCM3 1950 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 ZFHX2Q9C0A1 2572 aaPredicted RBP9.33□□□□□ -0.92
CUX1-221ENST00000622516 FAM166BA8MTA8 275 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 GOSR2O14653 212 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 CRTAPO75718 401 aaPredicted RBP9.33□□□□□ -0.92
CUX1-221ENST00000622516 HPP00738 406 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 PLATP00750 562 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 ITGA3P26006 1051 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 SRD5A2P31213 254 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 RAC3P60763 192 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 CHAF1BQ13112 559 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 ATP1A1-AS1Q5TC04 95 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 FAM122CQ6P4D5 195 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 SEZ6L2Q6UXD5 910 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 ZNF584Q8IVC4 421 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 NAXDQ8IW45 347 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 FOXRED1Q96CU9 486 aaPredicted RBP9.33□□□□□ -0.92
CUX1-221ENST00000622516 ELL3Q9HB65 397 aaPredicted RBP9.33□□□□□ -0.92
CUX1-221ENST00000622516 GPN1Q9HCN4 374 aaPredicted RBP9.33□□□□□ -0.92
CUX1-221ENST00000622516 FOXD3Q9UJU5 478 aaPredicted RBP9.33□□□□□ -0.92
CUX1-221ENST00000622516 KCNK7Q9Y2U2 307 aa9.33□□□□□ -0.92
CUX1-221ENST00000622516 VAMP5O95183 116 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 SERPINA7P05543 415 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 POU3F2P20265 443 aaPredicted RBP9.32□□□□□ -0.92
CUX1-221ENST00000622516 BPIFB3P59826 476 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 UBE2V2Q15819 145 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 KCNMB1Q16558 191 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 C11orf88Q6PI97 169 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 OR8H3Q8N146 312 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 OR14K1Q8NGZ2 314 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 FGFBP3Q8TAT2 258 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 PIGLQ9Y2B2 252 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 NBEAQ8NFP9 2946 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 GVINP1Q7Z2Y8 2422 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 M0R135 149 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 MPC2O95563 127 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 PMP2P02689 132 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 ZNF35P13682 527 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 HRH1P35367 487 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 PER3P56645 1201 aa9.32□□□□□ -0.92
CUX1-221ENST00000622516 LSM6P62312 80 aaKnown RBP9.32□□□□□ -0.92
CUX1-221ENST00000622516 GRB2P62993 217 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms