RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 UBCP0CG48 685 aaKnown RBP16.82■□□□□ 0.28
UPF3A-211ENST00000618700 CDK5R1Q15078 307 aa16.82■□□□□ 0.28
UPF3A-211ENST00000618700 NKPD1Q17RQ9 610 aa16.82■□□□□ 0.28
UPF3A-211ENST00000618700 RPL22L1Q6P5R6 122 aaKnown RBP16.82■□□□□ 0.28
UPF3A-211ENST00000618700 OR56B2PQ8NGI1 322 aa16.82■□□□□ 0.28
UPF3A-211ENST00000618700 GTF3AQ92664 365 aaKnown RBP16.82■□□□□ 0.28
UPF3A-211ENST00000618700 PIGTQ969N2 578 aa16.82■□□□□ 0.28
UPF3A-211ENST00000618700 ITFG2Q969R8 447 aa16.82■□□□□ 0.28
UPF3A-211ENST00000618700 OR5M11Q96RB7 305 aa16.82■□□□□ 0.28
UPF3A-211ENST00000618700 DYNLRB1Q9NP97 96 aa16.82■□□□□ 0.28
UPF3A-211ENST00000618700 GPR160Q9UJ42 338 aa16.82■□□□□ 0.28
UPF3A-211ENST00000618700 SIRT4Q9Y6E7 314 aaPredicted RBP16.82■□□□□ 0.28
UPF3A-211ENST00000618700 GGT3PA6NGU5 568 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 ZSCAN5BA6NJL1 495 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 P2RY10O00398 339 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 OGG1O15527 345 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 ISG15P05161 165 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 BMP4P12644 408 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 ATP6V1B1P15313 513 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 ACKR3P25106 362 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 DDOSTP39656 456 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 CDH15P55291 814 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 TAS2R43P59537 309 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 BDH1Q02338 343 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 ACSM1Q08AH1 577 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 SPHARQ15513 63 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 ZNF773Q6PK81 442 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 Q6ZR03 302 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 OR5AS1Q8N127 324 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 BHLHE23Q8NDY6 225 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 OR8G5Q8NG78 346 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 NINJ1Q92982 152 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 CXorf56Q9H5V9 222 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 CYSLTR2Q9NS75 346 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 ZNF701Q9NV72 531 aaPredicted RBP16.81■□□□□ 0.28
UPF3A-211ENST00000618700 EDARQ9UNE0 448 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 PMF1-BGLAPU3KQ54 211 aa16.81■□□□□ 0.28
UPF3A-211ENST00000618700 LOC107986453A0A1B0GWG9 222 aa16.8■□□□□ 0.28
UPF3A-211ENST00000618700 TMEM212A6NML5 194 aa16.8■□□□□ 0.28
UPF3A-211ENST00000618700 DHRS3O75911 302 aa16.8■□□□□ 0.28
UPF3A-211ENST00000618700 ZFPL1O95159 310 aa16.8■□□□□ 0.28
UPF3A-211ENST00000618700 TNFAIP8O95379 198 aa16.8■□□□□ 0.28
UPF3A-211ENST00000618700 ADH4P08319 380 aa16.8■□□□□ 0.28
UPF3A-211ENST00000618700 LIPAP38571 399 aa16.8■□□□□ 0.28
UPF3A-211ENST00000618700 MAP2K4P45985 399 aa16.8■□□□□ 0.28
UPF3A-211ENST00000618700 ODF4Q2M2E3 257 aa16.8■□□□□ 0.28
UPF3A-211ENST00000618700 DMKNQ6E0U4 476 aaPredicted RBP16.8■□□□□ 0.28
UPF3A-211ENST00000618700 DOK3Q7L591 496 aa16.8■□□□□ 0.28
UPF3A-211ENST00000618700 COMMD2Q86X83 199 aa16.8■□□□□ 0.28
UPF3A-211ENST00000618700 SPARTQ8N0X7 666 aa16.8■□□□□ 0.28
UPF3A-211ENST00000618700 MBD6Q96DN6 1003 aa16.8■□□□□ 0.28
UPF3A-211ENST00000618700 SMIM19Q96E16 107 aa16.8■□□□□ 0.28
UPF3A-211ENST00000618700 FAM71F1Q96KD3 344 aaPredicted RBP16.8■□□□□ 0.28
UPF3A-211ENST00000618700 SLC30A2Q9BRI3 323 aa16.8■□□□□ 0.28
UPF3A-211ENST00000618700 MRPL15Q9P015 296 aaKnown RBP16.8■□□□□ 0.28
UPF3A-211ENST00000618700 NOTCH2Q04721 2471 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 TRBV2A0A0J9YWF9 115 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 PLSCR5A0PG75 271 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 C17orf100A8MU93 164 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 F12P00748 615 aaPredicted RBP16.79■□□□□ 0.28
UPF3A-211ENST00000618700 NAT2P11245 290 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 PAX1P15863 534 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 DNASE1P24855 282 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 CDKN1AP38936 164 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 ZNF81P51508 661 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 PRR20EP86478 221 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 PRR20CP86479 221 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 PRR20DP86480 221 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 PRR20BP86481 221 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 PRR20AP86496 221 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 ZMAT1Q5H9K5 638 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 TMEM244Q5VVB8 128 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 KRT74Q7RTS7 529 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 CDH24Q86UP0 819 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 RDH10Q8IZV5 341 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 SVOPQ8N4V2 548 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 CSNK2A3Q8NEV1 391 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 OR14K1Q8NGZ2 314 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 MS4A5Q9H3V2 200 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 ZNF696Q9H7X3 374 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 MSL2Q9HCI7 577 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 ACOT13Q9NPJ3 140 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 V9GYS6 101 aa16.79■□□□□ 0.28
UPF3A-211ENST00000618700 USF3Q68DE3 2245 aa16.78■□□□□ 0.28
UPF3A-211ENST00000618700 CSMD1Q96PZ7 3565 aa16.78■□□□□ 0.28
UPF3A-211ENST00000618700 A0A1B0GVI7 797 aa16.78■□□□□ 0.28
UPF3A-211ENST00000618700 DHRS7CA6NNS2 312 aa16.78■□□□□ 0.28
UPF3A-211ENST00000618700 MTRF1O75570 445 aaKnown RBP16.78■□□□□ 0.28
UPF3A-211ENST00000618700 PCMT1P22061 227 aa16.78■□□□□ 0.28
UPF3A-211ENST00000618700 ACHEP22303 614 aa16.78■□□□□ 0.28
UPF3A-211ENST00000618700 MAP2K3P46734 347 aa16.78■□□□□ 0.28
UPF3A-211ENST00000618700 EMX1Q04741 257 aaPredicted RBP16.78■□□□□ 0.28
UPF3A-211ENST00000618700 ZCCHC24Q8N2G6 241 aaKnown RBP16.78■□□□□ 0.28
UPF3A-211ENST00000618700 ZNF676Q8N7Q3 588 aa16.78■□□□□ 0.28
UPF3A-211ENST00000618700 ZFP41Q8N8Y5 198 aa16.78■□□□□ 0.28
UPF3A-211ENST00000618700 CCDC54Q8NEL0 328 aa16.78■□□□□ 0.28
UPF3A-211ENST00000618700 OR10AC1Q8NH08 325 aa16.78■□□□□ 0.28
UPF3A-211ENST00000618700 OR5AK2Q8NH90 309 aa16.78■□□□□ 0.28
UPF3A-211ENST00000618700 PGLYRP3Q96LB9 341 aa16.78■□□□□ 0.28
UPF3A-211ENST00000618700 SORCS2Q96PQ0 1159 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms