RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 EXOGQ9Y2C4 368 aaKnown RBP12.6□□□□□ -0.39
CPSF1-212ENST00000616140 NME1P15531 152 aaKnown RBP12.59□□□□□ -0.39
CPSF1-212ENST00000616140 AANATQ16613 207 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 CEACAM16Q2WEN9 425 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 PRAMEF5Q5TYX0 476 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 PRAMEF6Q5VXH4 476 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 TMEM229BQ8NBD8 167 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 GNPNAT1Q96EK6 184 aaPredicted RBP12.59□□□□□ -0.39
CPSF1-212ENST00000616140 MOGAT1Q96PD6 335 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 GHRLQ9UBU3 117 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 MEIKINA0A087WXM9 373 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 GLAP06280 429 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 RAB4AP20338 218 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 C16orf47Q6ZP98 133 aaPredicted RBP12.59□□□□□ -0.39
CPSF1-212ENST00000616140 DTWD2Q8NBA8 298 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 GPX8Q8TED1 209 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 LRP5LA4QPB2 252 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 SIRPB1O00241 398 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 GLULP15104 373 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 ELFN2Q5R3F8 820 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 LHFPL2Q6ZUX7 228 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 PP6455Q8WZ26 134 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 ROBO4Q8WZ75 1007 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 CMBLQ96DG6 245 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 ZNF768Q9H5H4 540 aaKnown RBP12.59□□□□□ -0.39
CPSF1-212ENST00000616140 NGBQ9NPG2 151 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 FOXJ3Q9UPW0 622 aa12.59□□□□□ -0.39
CPSF1-212ENST00000616140 ANKUB1A6NFN9 424 aa12.58□□□□□ -0.39
CPSF1-212ENST00000616140 H7BYZ3 331 aa12.58□□□□□ -0.39
CPSF1-212ENST00000616140 BHLHE40O14503 412 aa12.58□□□□□ -0.39
CPSF1-212ENST00000616140 AGFG1P52594 562 aaKnown RBP12.58□□□□□ -0.39
CPSF1-212ENST00000616140 OR8G1Q15617 311 aa12.58□□□□□ -0.39
CPSF1-212ENST00000616140 ZNF239Q16600 458 aaKnown RBP12.58□□□□□ -0.39
CPSF1-212ENST00000616140 H1FXQ92522 213 aaKnown RBP12.58□□□□□ -0.39
CPSF1-212ENST00000616140 TRIP12Q14669 1992 aaPredicted RBP12.58□□□□□ -0.4
CPSF1-212ENST00000616140 SERPINE3A8MV23 424 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 NUDT19A8MXV4 375 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 H3BP45 60 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 TNFSF11O14788 317 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 CBR3O75828 277 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 PIAS2O75928 621 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 OR2C1O95371 312 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 TXNDC12O95881 172 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 RAG2P55895 527 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 CLLU1Q5K131 121 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 LRRTM1Q86UE6 522 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 FBXL14Q8N1E6 418 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 LHX4Q969G2 390 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 CMTM3Q96MX0 182 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 FN3KRPQ9HA64 309 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 RER1O15258 196 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 WISP3O95389 354 aaPredicted RBP12.58□□□□□ -0.4
CPSF1-212ENST00000616140 SLC10A1Q14973 349 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 SLC35G3Q8N808 338 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 OR2AE1Q8NHA4 323 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 CCDC74BQ96LY2 380 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 RFPL4AA6NLU0 287 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 RFPL4AL1F8VTS6 287 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 BCL2L11O43521 198 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 SPRY1O43609 319 aaPredicted RBP12.58□□□□□ -0.4
CPSF1-212ENST00000616140 CTLA4P16410 223 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 INSM1Q01101 510 aaPredicted RBP12.58□□□□□ -0.4
CPSF1-212ENST00000616140 DHRS2Q13268 280 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 PLA1AQ53H76 456 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 ZNF573Q86YE8 665 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 MUC20Q8N307 709 aaPredicted RBP12.58□□□□□ -0.4
CPSF1-212ENST00000616140 MED9Q9NWA0 146 aa12.58□□□□□ -0.4
CPSF1-212ENST00000616140 SPTBN1Q01082 2364 aaKnown RBP12.57□□□□□ -0.4
CPSF1-212ENST00000616140 ACSM4P0C7M7 580 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 FAM157BP0CG42 384 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 HTRA4P83105 476 aaPredicted RBP12.57□□□□□ -0.4
CPSF1-212ENST00000616140 HYAL1Q12794 435 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 ZIC1Q15915 447 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 SP6Q3SY56 376 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 PDZD11Q5EBL8 140 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 C11orf87Q6NUJ2 197 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 RPUSD3Q6P087 351 aaKnown RBP12.57□□□□□ -0.4
CPSF1-212ENST00000616140 ANKRD16Q6P6B7 361 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 SSX9Q7RTT3 188 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 LSRQ86X29 649 aaPredicted RBP12.57□□□□□ -0.4
CPSF1-212ENST00000616140 RBMXL3Q8N7X1 1067 aaKnown RBP12.57□□□□□ -0.4
CPSF1-212ENST00000616140 ZFP62Q8NB50 900 aaPredicted RBP12.57□□□□□ -0.4
CPSF1-212ENST00000616140 GNRHR2Q96P88 292 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 PPP5D1E7EU14 171 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 SMAD4Q13485 552 aaKnown RBP12.57□□□□□ -0.4
CPSF1-212ENST00000616140 ZNF439Q8NDP4 499 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 DEFB108BQ8NET1 73 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 NOXO1Q8NFA2 376 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 ST6GAL2Q96JF0 529 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 DHRS9Q9BPW9 319 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 OPA3Q9H6K4 179 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 DOCK1Q14185 1865 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 EPPINO95925 133 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 C1QCP02747 245 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 CELA2BP08218 269 aaPredicted RBP12.57□□□□□ -0.4
CPSF1-212ENST00000616140 COL9A1P20849 921 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 SLC6A1P30531 599 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 GPR3P46089 330 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 RBPJQ06330 500 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 GSG1Q2KHT4 349 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms