RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 PRSS45Q7RTY3 260 aa16.35■□□□□ 0.21
UPF1-212ENST00000601689 MOGAT3Q86VF5 341 aa16.35■□□□□ 0.21
UPF1-212ENST00000601689 OR10H4Q8NGA5 316 aa16.35■□□□□ 0.21
UPF1-212ENST00000601689 HIST1H2AAQ96QV6 131 aa16.35■□□□□ 0.21
UPF1-212ENST00000601689 APOL4Q9BPW4 351 aa16.35■□□□□ 0.21
UPF1-212ENST00000601689 KLHDC2Q9Y2U9 406 aa16.35■□□□□ 0.21
UPF1-212ENST00000601689 MALRD1Q5VYJ5 2156 aa16.35■□□□□ 0.21
UPF1-212ENST00000601689 ZANQ9Y493 2812 aa16.35■□□□□ 0.21
UPF1-212ENST00000601689 hCG_38984A0A1B0GV85 526 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 LOC110117498-PIK3R3F6TDL0 507 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 TMEM178BH3BS89 294 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 IFNA2P01563 188 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 MSMBP08118 114 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 ATP6V1B1P15313 513 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 CPT2P23786 658 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 IL2RGP31785 369 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 MDH2P40926 338 aaKnown RBP16.34■□□□□ 0.21
UPF1-212ENST00000601689 MAP2K3P46734 347 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 MTNR1AP48039 350 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 MMP16P51512 607 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 SNRPGP62308 76 aaKnown RBP16.34■□□□□ 0.21
UPF1-212ENST00000601689 ACTC1P68032 377 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 ACTA1P68133 377 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 IL5RAQ01344 420 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 SLC25A30Q5SVS4 291 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 FAM220AQ7Z4H9 259 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 THAP5Q7Z6K1 395 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 TEX29Q8N6K0 151 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 OR8B12Q8NGG6 310 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 ZNF420Q8TAQ5 688 aaPredicted RBP16.34■□□□□ 0.21
UPF1-212ENST00000601689 C1orf159Q96HA4 380 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 MICU1Q9BPX6 476 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 PAPOLGQ9BWT3 736 aaKnown RBP16.34■□□□□ 0.21
UPF1-212ENST00000601689 COPS3Q9UNS2 423 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 MPC1Q9Y5U8 109 aa16.34■□□□□ 0.21
UPF1-212ENST00000601689 TRAV20A0A0B4J274 112 aa16.33■□□□□ 0.2
UPF1-212ENST00000601689 A0A0U1RQV5 110 aa16.33■□□□□ 0.2
UPF1-212ENST00000601689 LOC100130705A0A1B0GUX0 176 aa16.33■□□□□ 0.2
UPF1-212ENST00000601689 A6NLC8 198 aa16.33■□□□□ 0.2
UPF1-212ENST00000601689 OCLNQ16625 522 aa16.33■□□□□ 0.2
UPF1-212ENST00000601689 PLEKHG7Q6ZR37 379 aa16.33■□□□□ 0.2
UPF1-212ENST00000601689 YIPF7Q8N8F6 280 aa16.33■□□□□ 0.2
UPF1-212ENST00000601689 TBX5Q99593 518 aa16.33■□□□□ 0.2
UPF1-212ENST00000601689 TTTY10Q9BZA0 68 aa16.33■□□□□ 0.2
UPF1-212ENST00000601689 PBOV1Q9GZY1 135 aa16.33■□□□□ 0.2
UPF1-212ENST00000601689 VCXQ9H320 206 aa16.33■□□□□ 0.2
UPF1-212ENST00000601689 TRIM36Q9NQ86 728 aa16.33■□□□□ 0.2
UPF1-212ENST00000601689 SMPD3Q9NY59 655 aaPredicted RBP16.33■□□□□ 0.2
UPF1-212ENST00000601689 SNX5Q9Y5X3 404 aa16.33■□□□□ 0.2
UPF1-212ENST00000601689 PPIAL4EA0A075B759 164 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 PPIAL4DF5H284 164 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 FOXH1O75593 365 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 SULT1C4O75897 302 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 IGHV2-70P01814 119 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 IGHV2-5P01817 119 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 GRPP07492 148 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 PPIAL4FP0DN26 164 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 HOXB4P17483 251 aaPredicted RBP16.32■□□□□ 0.2
UPF1-212ENST00000601689 LMO4P61968 165 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 MAB21L1Q13394 359 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 RCN1Q15293 331 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 SPRNQ5BIV9 151 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 BCL2L15Q5TBC7 163 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 LRRC28Q86X40 367 aaPredicted RBP16.32■□□□□ 0.2
UPF1-212ENST00000601689 TMEM186Q96B77 213 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 POM121Q96HA1 1249 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 SLC29A1Q99808 456 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 ADI1Q9BV57 179 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 UFSP2Q9NUQ7 469 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 FAM206AQ9NX38 181 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 RNF7Q9UBF6 113 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 PPIAL4AQ9Y536 164 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 R4GMQ9 66 aa16.32■□□□□ 0.2
UPF1-212ENST00000601689 SETD2Q9BYW2 2564 aaPredicted RBP16.32■□□□□ 0.2
UPF1-212ENST00000601689 IGHV3-64DA0A0J9YX35 117 aa16.31■□□□□ 0.2
UPF1-212ENST00000601689 hCG_1807616A0A1W2PRN6 198 aa16.31■□□□□ 0.2
UPF1-212ENST00000601689 METTL15A6NJ78 407 aa16.31■□□□□ 0.2
UPF1-212ENST00000601689 WNT9BO14905 357 aa16.31■□□□□ 0.2
UPF1-212ENST00000601689 OR8B8Q15620 311 aa16.31■□□□□ 0.2
UPF1-212ENST00000601689 NLRC3Q7RTR2 1065 aa16.31■□□□□ 0.2
UPF1-212ENST00000601689 KCTD20Q7Z5Y7 419 aa16.31■□□□□ 0.2
UPF1-212ENST00000601689 GALNT4Q8N4A0 578 aa16.31■□□□□ 0.2
UPF1-212ENST00000601689 PACRGLQ8N7B6 248 aa16.31■□□□□ 0.2
UPF1-212ENST00000601689 SEMA6DQ8NFY4 1073 aa16.31■□□□□ 0.2
UPF1-212ENST00000601689 Q8TCH9 128 aa16.31■□□□□ 0.2
UPF1-212ENST00000601689 PIGCQ92535 297 aa16.31■□□□□ 0.2
UPF1-212ENST00000601689 RNFT2Q96EX2 444 aa16.31■□□□□ 0.2
UPF1-212ENST00000601689 RTL8AQ9BWD3 113 aa16.31■□□□□ 0.2
UPF1-212ENST00000601689 LPAR2Q9HBW0 351 aa16.31■□□□□ 0.2
UPF1-212ENST00000601689 FAM118AQ9NWS6 357 aa16.31■□□□□ 0.2
UPF1-212ENST00000601689 ZNF319Q9P2F9 582 aa16.31■□□□□ 0.2
UPF1-212ENST00000601689 NUFIP1Q9UHK0 495 aaKnown RBP16.31■□□□□ 0.2
UPF1-212ENST00000601689 NIPBLQ6KC79 2804 aaeCLIP16.3■□□□□ 0.2
UPF1-212ENST00000601689 ZNF816-ZNF321PA0A0X1KG74 233 aa16.3■□□□□ 0.2
UPF1-212ENST00000601689 A0A1W2PQL4 384 aaPredicted RBP16.3■□□□□ 0.2
UPF1-212ENST00000601689 DAPL1A0PJW8 107 aa16.3■□□□□ 0.2
UPF1-212ENST00000601689 C5orf63A6NC05 138 aa16.3■□□□□ 0.2
UPF1-212ENST00000601689 ENTPD6O75354 484 aa16.3■□□□□ 0.2
UPF1-212ENST00000601689 FSTL3O95633 263 aa16.3■□□□□ 0.2
UPF1-212ENST00000601689 CYB5R3P00387 301 aaPredicted RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms