RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 GK2Q14410 553 aaPredicted RBP13.17□□□□□ -0.3
SS18-215ENST00000580642 TMEM42Q69YG0 159 aa13.17□□□□□ -0.3
SS18-215ENST00000580642 MYO7BQ6PIF6 2116 aa13.17□□□□□ -0.3
SS18-215ENST00000580642 RFPL4BQ6ZWI9 263 aa13.17□□□□□ -0.3
SS18-215ENST00000580642 MYPOPQ86VE0 399 aaPredicted RBP13.17□□□□□ -0.3
SS18-215ENST00000580642 ZNF101Q8IZC7 436 aa13.17□□□□□ -0.3
SS18-215ENST00000580642 NUP37Q8NFH4 326 aa13.17□□□□□ -0.3
SS18-215ENST00000580642 ACOT12Q8WYK0 555 aa13.17□□□□□ -0.3
SS18-215ENST00000580642 HAVCR1Q96D42 359 aa13.17□□□□□ -0.3
SS18-215ENST00000580642 CPNE2Q96FN4 548 aaPredicted RBP13.17□□□□□ -0.3
SS18-215ENST00000580642 WFIKKN1Q96NZ8 548 aa13.17□□□□□ -0.3
SS18-215ENST00000580642 CHST5Q9GZS9 411 aa13.17□□□□□ -0.3
SS18-215ENST00000580642 ESRP2Q9H6T0 727 aaKnown RBP13.17□□□□□ -0.3
SS18-215ENST00000580642 RNF167Q9H6Y7 350 aa13.17□□□□□ -0.3
SS18-215ENST00000580642 TMEM138Q9NPI0 162 aa13.17□□□□□ -0.3
SS18-215ENST00000580642 NPAP1Q9NZP6 1156 aa13.17□□□□□ -0.3
SS18-215ENST00000580642 A0A075B6Q4 140 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 ZNF816-ZNF321PA0A0X1KG74 233 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 C5orf63A6NC05 138 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 SULT1B1O43704 296 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 ZG16O60844 167 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 CST4P01036 141 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 PRB1P04280 392 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 GLRXP35754 106 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 CAPZA1P52907 286 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 SCAND1P57086 179 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 GFOD2Q3B7J2 385 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 ZNF718Q3SXZ3 478 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 CLVS2Q5SYC1 327 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 FAM27D1Q5T7N8 215 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 MBNL2Q5VZF2 373 aaKnown RBP13.16□□□□□ -0.3
SS18-215ENST00000580642 LRRTM1Q86UE6 522 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 OR1J1Q8NGS3 322 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 OR2AE1Q8NHA4 323 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 SPSB1Q96BD6 273 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 ADAT3Q96EY9 351 aaPredicted RBP13.16□□□□□ -0.3
SS18-215ENST00000580642 C1QTNF6Q9BXI9 259 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 SLIRPQ9GZT3 109 aaKnown RBP13.16□□□□□ -0.3
SS18-215ENST00000580642 NXF2Q9GZY0 626 aaKnown RBP13.16□□□□□ -0.3
SS18-215ENST00000580642 SLC22A4Q9H015 551 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 MMP27Q9H306 513 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 PIGLQ9Y2B2 252 aa13.16□□□□□ -0.3
SS18-215ENST00000580642 NBASA2RRP1 2371 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 A0A1W2PPK0 400 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 SHISA3A0PJX4 238 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 NKX2-6A6NCS4 301 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 WIPF3A6NGB9 483 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 GGT3PA6NGU5 568 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 TUBAL3A6NHL2 446 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 CD300LBA8K4G0 201 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 VSTM5A8MXK1 200 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 PRKACBP22694 351 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 BDKRB2P30411 391 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 NKX6-1P78426 367 aaPredicted RBP13.15□□□□□ -0.3
SS18-215ENST00000580642 ZNF404Q494X3 552 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 CEP78Q5JTW2 689 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 GLT8D1Q68CQ7 371 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 WFDC8Q8IUA0 241 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 DNAAF1Q8NEP3 725 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 OR1M1Q8NGA1 313 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 MARS2Q96GW9 593 aaKnown RBP13.15□□□□□ -0.3
SS18-215ENST00000580642 UQCC2Q9BRT2 126 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 DCUN1D5Q9BTE7 237 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 MRPL15Q9P015 296 aaKnown RBP13.15□□□□□ -0.3
SS18-215ENST00000580642 KCNN3Q9UGI6 736 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 NOP16Q9Y3C1 178 aaKnown RBP13.15□□□□□ -0.3
SS18-215ENST00000580642 MPC1Q9Y5U8 109 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 V9GY05 133 aa13.15□□□□□ -0.3
SS18-215ENST00000580642 CFAP46Q8IYW2 2715 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 TRAV8-7A0A075B6U6 113 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 ANXA2P2A6NMY6 339 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 IQCF6A8MYZ5 107 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 AIPO00170 330 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 MAGEB3O15480 346 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 GOSR1O95249 250 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 PRF1P14222 555 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 KITLGP21583 273 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 ANOS1P23352 680 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 ACKR3P25106 362 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 CALCRP30988 508 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 TGFBR1P36897 503 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 MAGEB1P43366 347 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 CNN3Q15417 329 aaKnown RBP13.14□□□□□ -0.31
SS18-215ENST00000580642 MOGQ16653 247 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 BEX5Q5H9J7 111 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 NCMAPQ5T1S8 102 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 ASPHD2Q6ICH7 369 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 SFXN4Q6P4A7 337 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 C22orf34Q6ZV56 151 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 SLC25A40Q8TBP6 338 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 KLF14Q8TD94 323 aaPredicted RBP13.14□□□□□ -0.31
SS18-215ENST00000580642 ZNF442Q9H7R0 627 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 TAS2R4Q9NYW5 299 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 PTTG3PQ9NZH4 202 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 ABRACLQ9P1F3 81 aa13.14□□□□□ -0.31
SS18-215ENST00000580642 CGGBP1Q9UFW8 167 aaPredicted RBP13.14□□□□□ -0.31
SS18-215ENST00000580642 KMT2BQ9UMN6 2715 aaPredicted RBP13.14□□□□□ -0.31
SS18-215ENST00000580642 DPRXA6NFQ7 191 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 IFITM5A6NNB3 132 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 ANKRD30BLA7E2S9 258 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms