RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ZNF701Q9NV72 531 aaPredicted RBP5.22□□□□□ -1.57
VPS53-212ENST00000572259 KLRF1Q9NZS2 232 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 MSRB1Q9NZV6 116 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 NAGKQ9UJ70 344 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 KLHDC2Q9Y2U9 406 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 PCNX3Q9H6A9 2034 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 RELNP78509 3460 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 MED12Q93074 2177 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 MPDZO75970 2070 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 ARHGAP21Q5T5U3 1957 aa5.22□□□□□ -1.57
VPS53-212ENST00000572259 A0A0A6YYH2 397 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 SH3PXD2BA1X283 911 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 CLEC18AA5D8T8 446 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 A6NJ64 397 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 RNASEK-C17orf49H0YIS7 233 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 TMEM178BH3BS89 294 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 CCL24O00175 119 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 CCL21O00585 134 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 CFLARO15519 480 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 EMC8O43402 210 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 ITM2AO43736 263 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 TRAPPC6AO75865 159 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 NADKO95544 446 aaPredicted RBP5.21□□□□□ -1.58
VPS53-212ENST00000572259 APOHP02749 345 aaPredicted RBP5.21□□□□□ -1.58
VPS53-212ENST00000572259 OCMP0CE72 109 aaPredicted RBP5.21□□□□□ -1.58
VPS53-212ENST00000572259 CCL3P10147 92 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 PRF1P14222 555 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 PGCP20142 388 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 CBLP22681 906 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 GDF1P27539 372 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 RPL13AP40429 203 aaKnown RBP5.21□□□□□ -1.58
VPS53-212ENST00000572259 CA7P43166 264 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 RFX3P48380 749 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 DNASE1L1P49184 302 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 ATP5J2P56134 94 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 FBXW4P57775 412 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 EWSR1Q01844 656 aaKnown RBP eCLIP5.21□□□□□ -1.58
VPS53-212ENST00000572259 ZNF155Q12901 538 aaPredicted RBP5.21□□□□□ -1.58
VPS53-212ENST00000572259 OPCMLQ14982 345 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 LTB4RQ15722 352 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 MRPL23Q16540 153 aaKnown RBP5.21□□□□□ -1.58
VPS53-212ENST00000572259 XKRXQ6PP77 449 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 CLEC18BQ6UXF7 455 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 C17orf107Q6ZR85 190 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 RANBP3LQ86VV4 465 aaPredicted RBP5.21□□□□□ -1.58
VPS53-212ENST00000572259 ERI1Q8IV48 349 aaKnown RBP5.21□□□□□ -1.58
VPS53-212ENST00000572259 OR2L13Q8N349 312 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 FGFRL1Q8N441 504 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 CDRT4Q8N9R6 151 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 POC1AQ8NBT0 407 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 CLEC18CQ8NCF0 446 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 ADAD2Q8NCV1 583 aaKnown RBP5.21□□□□□ -1.58
VPS53-212ENST00000572259 OR10G3Q8NGC4 313 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 OR1J4Q8NGS1 313 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 OR13C5Q8NGS8 318 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 OR5R1Q8NH85 324 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 MPLKIPQ8TAP9 179 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 SPPL2AQ8TCT8 520 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 SLC38A5Q8WUX1 472 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 OR5P2Q8WZ92 322 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 OMA1Q96E52 524 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 C3orf30Q96M34 536 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 COL21A1Q96P44 957 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 OPALINQ96PE5 141 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 TTTY12Q9BZ98 90 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 NXF5Q9H1B4 397 aaKnown RBP5.21□□□□□ -1.58
VPS53-212ENST00000572259 ANKRD19PQ9H560 264 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 SH2D2AQ9NP31 389 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 FAF1Q9UNN5 650 aaPredicted RBP5.21□□□□□ -1.58
VPS53-212ENST00000572259 PAM16Q9Y3D7 125 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 PTGDR2Q9Y5Y4 395 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 FKBP7Q9Y680 259 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 CHCHD2Q9Y6H1 151 aaPredicted RBP5.21□□□□□ -1.58
VPS53-212ENST00000572259 HECTD1Q9ULT8 2610 aa5.21□□□□□ -1.58
VPS53-212ENST00000572259 TRGV5A0A0B4J1U4 118 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 A0A1B0GTH9 108 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 CCDC182A6NF36 153 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 FAM166BA8MTA8 275 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 ZNF99A8MXY4 864 aaPredicted RBP5.2□□□□□ -1.58
VPS53-212ENST00000572259 ZNF814B7Z6K7 855 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 G3V3Y1 287 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 UPK1AO00322 258 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 CCSO14618 274 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 SH2D1BO14796 132 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 ZNF354AO60765 605 aaPredicted RBP5.2□□□□□ -1.58
VPS53-212ENST00000572259 GLSO94925 669 aaPredicted RBP5.2□□□□□ -1.58
VPS53-212ENST00000572259 FADS2O95864 444 aaKnown RBP5.2□□□□□ -1.58
VPS53-212ENST00000572259 CST4P01036 141 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 IGHG3P01860 377 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 CLPSP04118 112 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 H2BFMP0C1H6 154 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 ANXA3P12429 323 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 GABRA1P14867 456 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 AADACP22760 399 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 GABRA3P34903 492 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 RFC3P40938 356 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 MAGEA5P43359 124 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 P2RY1P47900 373 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 ISL1P61371 349 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 ADARB1P78563 741 aaKnown RBP5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms