RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 LHFPL6Q9Y693 200 aa14.45□□□□□ -0.1
CLK3-227ENST00000570296 ALMS1Q8TCU4 4167 aa14.44□□□□□ -0.1
CLK3-227ENST00000570296 GGT3PA6NGU5 568 aa14.44□□□□□ -0.1
CLK3-227ENST00000570296 KHDRBS3O75525 346 aaKnown RBP14.44□□□□□ -0.1
CLK3-227ENST00000570296 OR5F1O95221 314 aa14.44□□□□□ -0.1
CLK3-227ENST00000570296 DYNLT3P51808 116 aa14.44□□□□□ -0.1
CLK3-227ENST00000570296 DGUOKQ16854 277 aa14.44□□□□□ -0.1
CLK3-227ENST00000570296 ANKDD1AQ495B1 522 aa14.44□□□□□ -0.1
CLK3-227ENST00000570296 PGM2L1Q6PCE3 622 aa14.44□□□□□ -0.1
CLK3-227ENST00000570296 WDR82Q6UXN9 313 aa14.44□□□□□ -0.1
CLK3-227ENST00000570296 ZNF788Q6ZQV5 615 aa14.44□□□□□ -0.1
CLK3-227ENST00000570296 LHFPL4Q7Z7J7 247 aa14.44□□□□□ -0.1
CLK3-227ENST00000570296 DYNAPQ8N1N2 210 aa14.44□□□□□ -0.1
CLK3-227ENST00000570296 BPIFA2Q96DR5 249 aa14.44□□□□□ -0.1
CLK3-227ENST00000570296 MYLK2Q9H1R3 596 aa14.44□□□□□ -0.1
CLK3-227ENST00000570296 HAO2Q9NYQ3 351 aa14.44□□□□□ -0.1
CLK3-227ENST00000570296 COA3Q9Y2R0 106 aaPredicted RBP14.44□□□□□ -0.1
CLK3-227ENST00000570296 TRBV5-3A0A0A0MS03 114 aa14.43□□□□□ -0.1
CLK3-227ENST00000570296 EVPLLA8MZ36 301 aa14.43□□□□□ -0.1
CLK3-227ENST00000570296 F5H5K5 113 aa14.43□□□□□ -0.1
CLK3-227ENST00000570296 BHLHE40O14503 412 aa14.43□□□□□ -0.1
CLK3-227ENST00000570296 GGT2P36268 569 aa14.43□□□□□ -0.1
CLK3-227ENST00000570296 TAS2R41P59536 307 aa14.43□□□□□ -0.1
CLK3-227ENST00000570296 MESTQ5EB52 335 aa14.43□□□□□ -0.1
CLK3-227ENST00000570296 SBSPONQ8IVN8 264 aa14.43□□□□□ -0.1
CLK3-227ENST00000570296 OR5T2Q8NGG2 359 aa14.43□□□□□ -0.1
CLK3-227ENST00000570296 OR5K1Q8NHB7 308 aa14.43□□□□□ -0.1
CLK3-227ENST00000570296 GAFA1Q96PS6 74 aa14.43□□□□□ -0.1
CLK3-227ENST00000570296 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.43□□□□□ -0.1
CLK3-227ENST00000570296 RIMS3Q9UJD0 308 aa14.43□□□□□ -0.1
CLK3-227ENST00000570296 ZNF391Q9UJN7 358 aa14.43□□□□□ -0.1
CLK3-227ENST00000570296 V9GYY5 206 aaPredicted RBP14.43□□□□□ -0.1
CLK3-227ENST00000570296 SORL1Q92673 2214 aa14.43□□□□□ -0.1
CLK3-227ENST00000570296 TRAV27A0A087WT01 109 aa14.42□□□□□ -0.1
CLK3-227ENST00000570296 SIGLEC5O15389 551 aa14.42□□□□□ -0.1
CLK3-227ENST00000570296 SLC16A7O60669 478 aa14.42□□□□□ -0.1
CLK3-227ENST00000570296 AZGP1P25311 298 aaKnown RBP14.42□□□□□ -0.1
CLK3-227ENST00000570296 SLC6A1P30531 599 aa14.42□□□□□ -0.1
CLK3-227ENST00000570296 SDHAP31040 664 aa14.42□□□□□ -0.1
CLK3-227ENST00000570296 MYCNOSP40205 109 aa14.42□□□□□ -0.1
CLK3-227ENST00000570296 TRAP1Q12931 704 aaKnown RBP14.42□□□□□ -0.1
CLK3-227ENST00000570296 STX3Q13277 289 aa14.42□□□□□ -0.1
CLK3-227ENST00000570296 FHL1Q13642 323 aa14.42□□□□□ -0.1
CLK3-227ENST00000570296 DPY19L4Q7Z388 723 aa14.42□□□□□ -0.1
CLK3-227ENST00000570296 MAVSQ7Z434 540 aa14.42□□□□□ -0.1
CLK3-227ENST00000570296 PATL1Q86TB9 770 aaKnown RBP14.42□□□□□ -0.1
CLK3-227ENST00000570296 NAA40Q86UY6 237 aa14.42□□□□□ -0.1
CLK3-227ENST00000570296 OR51A7Q8NH64 312 aa14.42□□□□□ -0.1
CLK3-227ENST00000570296 MALSU1Q96EH3 234 aa14.42□□□□□ -0.1
CLK3-227ENST00000570296 RERGLQ9H628 205 aa14.42□□□□□ -0.1
CLK3-227ENST00000570296 ADA2Q9NZK5 511 aa14.42□□□□□ -0.1
CLK3-227ENST00000570296 TBL2Q9Y4P3 447 aaKnown RBP14.42□□□□□ -0.1
CLK3-227ENST00000570296 UBDO15205 165 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 IFI30P13284 250 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 COX7A1P24310 79 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 SPIBQ01892 262 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 ZNF92Q03936 586 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 WDR93Q6P2C0 686 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 CORO6Q6QEF8 472 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 WDR86Q86TI4 376 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 FAM185AQ8N0U4 392 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 FAM156AQ8NDB6 213 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 OR1M1Q8NGA1 313 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 OR8S1Q8NH09 359 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 RASSF5Q8WWW0 418 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 TAMM41Q96BW9 452 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 Q96M85 177 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 RAB3IPQ96QF0 476 aaPredicted RBP14.41□□□□□ -0.1
CLK3-227ENST00000570296 P2RX4Q99571 388 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 ATF6BQ99941 703 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 SYT4Q9H2B2 425 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 ZMAT4Q9H898 229 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 ADAM18Q9Y3Q7 739 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 LRP12Q9Y561 859 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 SMAD5-AS1Q9Y6J3 95 aa14.41□□□□□ -0.1
CLK3-227ENST00000570296 H3BUI4 141 aa14.4□□□□□ -0.1
CLK3-227ENST00000570296 TIPRLO75663 272 aa14.4□□□□□ -0.1
CLK3-227ENST00000570296 RHBDL1O75783 438 aa14.4□□□□□ -0.1
CLK3-227ENST00000570296 CD14P08571 375 aa14.4□□□□□ -0.1
CLK3-227ENST00000570296 ACAA1P09110 424 aaPredicted RBP14.4□□□□□ -0.1
CLK3-227ENST00000570296 CSNK2BP67870 215 aa14.4□□□□□ -0.1
CLK3-227ENST00000570296 C10orf99Q6UWK7 81 aa14.4□□□□□ -0.1
CLK3-227ENST00000570296 TSEN54Q7Z6J9 526 aaKnown RBP14.4□□□□□ -0.1
CLK3-227ENST00000570296 OAFQ86UD1 273 aa14.4□□□□□ -0.1
CLK3-227ENST00000570296 ANGPTL6Q8NI99 470 aa14.4□□□□□ -0.1
CLK3-227ENST00000570296 SLC26A7Q8TE54 656 aa14.4□□□□□ -0.1
CLK3-227ENST00000570296 ISOC1Q96CN7 298 aa14.4□□□□□ -0.1
CLK3-227ENST00000570296 RBMXL1Q96E39 390 aaKnown RBP14.4□□□□□ -0.1
CLK3-227ENST00000570296 ZNF570Q96NI8 536 aa14.4□□□□□ -0.1
CLK3-227ENST00000570296 KCNK9Q9NPC2 374 aa14.4□□□□□ -0.1
CLK3-227ENST00000570296 hCG_1809904A0A1W2PP81 198 aa14.39□□□□□ -0.11
CLK3-227ENST00000570296 A0A1W2PPE2 198 aa14.39□□□□□ -0.11
CLK3-227ENST00000570296 A0A1W2PPH5 198 aa14.39□□□□□ -0.11
CLK3-227ENST00000570296 A0A1W2PR64 198 aa14.39□□□□□ -0.11
CLK3-227ENST00000570296 A0A1W2PRV1 198 aa14.39□□□□□ -0.11
CLK3-227ENST00000570296 ECI1P42126 302 aa14.39□□□□□ -0.11
CLK3-227ENST00000570296 TPTEP56180 551 aa14.39□□□□□ -0.11
CLK3-227ENST00000570296 RPL23AP62750 156 aaKnown RBP14.39□□□□□ -0.11
CLK3-227ENST00000570296 VSNL1P62760 191 aa14.39□□□□□ -0.11
CLK3-227ENST00000570296 PIN1Q13526 163 aaPredicted RBP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms