RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 TBX1O43435 398 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 GSTZ1O43708 216 aaPredicted RBP6.95□□□□□ -1.3
VPS39-213ENST00000570062 ZNF780AO75290 641 aaPredicted RBP6.95□□□□□ -1.3
VPS39-213ENST00000570062 MAS1P04201 325 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 CHRM2P08172 466 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 TMIGD3P0DMS9 266 aaPredicted RBP6.95□□□□□ -1.3
VPS39-213ENST00000570062 ARSBP15848 533 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 ABOP16442 354 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 ELK1P19419 428 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 SPINK2P20155 84 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 STOMP27105 288 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 OPRM1P35372 400 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 CASP6P55212 293 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 CAV3P56539 151 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 OR10A3P58181 314 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 SSBP1Q04837 148 aaKnown RBP6.95□□□□□ -1.3
VPS39-213ENST00000570062 GPR176Q14439 515 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 OXA1LQ15070 435 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 TBC1D28Q2M2D7 210 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 ODF4Q2M2E3 257 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 SLC25A35Q3KQZ1 300 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 C3orf36Q3SXR2 165 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 ZNF324BQ6AW86 544 aaPredicted RBP6.95□□□□□ -1.3
VPS39-213ENST00000570062 TMEM211Q6ICI0 200 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 ZNF774Q6NX45 483 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 SHISA2Q6UWI4 295 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 TFAP2EQ6VUC0 442 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 COLCA1Q6ZS62 124 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 LINGO2Q7L985 606 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 KRT74Q7RTS7 529 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 OR2W3Q7Z3T1 314 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 CDH24Q86UP0 819 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 LYSMD2Q8IV50 215 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 POC5Q8NA72 575 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 DNAAF1Q8NEP3 725 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 CSNK2A3Q8NEV1 391 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 OR14K1Q8NGZ2 314 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 BCL2L2Q92843 193 aaPredicted RBP6.95□□□□□ -1.3
VPS39-213ENST00000570062 SPSB4Q96A44 273 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 S100A13Q99584 98 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 SLC22A4Q9H015 551 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 WNT5BQ9H1J7 359 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 SLC25A18Q9H1K4 315 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 ABCB10Q9NRK6 738 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 RAB22AQ9UL26 194 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 CLEC4AQ9UMR7 237 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 SLC7A11Q9UPY5 501 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 AMDHD2Q9Y303 409 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 NOP16Q9Y3C1 178 aaKnown RBP6.95□□□□□ -1.3
VPS39-213ENST00000570062 IGF2RP11717 2491 aa6.95□□□□□ -1.3
VPS39-213ENST00000570062 USP9XQ93008 2570 aaPredicted RBP6.94□□□□□ -1.3
VPS39-213ENST00000570062 TRAV8-7A0A075B6U6 113 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 PRSS44E7EML9 344 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 SULT1C2O00338 296 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 XRCC3O43542 346 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 ICMTO60725 284 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 HLA-DQB1P01920 261 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 CD79AP11912 226 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 IL7P13232 177 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 EDN3P14138 238 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 PRF1P14222 555 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 CBR1P16152 277 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 SELEP16581 610 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 ADRA2CP18825 462 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 COX5AP20674 150 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 ZNF93P35789 620 aaPredicted RBP6.94□□□□□ -1.3
VPS39-213ENST00000570062 ALDH3B1P43353 468 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 KIR2DL2P43627 348 aaPredicted RBP6.94□□□□□ -1.3
VPS39-213ENST00000570062 KLRB1Q12918 225 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 ASAH1Q13510 395 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 C3AR1Q16581 482 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 RSPO1Q2MKA7 263 aaPredicted RBP6.94□□□□□ -1.3
VPS39-213ENST00000570062 TBRG1Q3YBR2 411 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 TMEM69Q5SWH9 247 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 CLVS2Q5SYC1 327 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 GLYATL3Q5SZD4 288 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 HES5Q5TA89 166 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 STEAP3Q658P3 488 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 RTL6Q6ICC9 239 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 FAM166AQ6J272 317 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 Q6ZNX1 250 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 NR2C2APQ86WQ0 139 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 KRTAP1-3Q8IUG1 177 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 JAGN1Q8N5M9 183 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 CNEP1R1Q8N9A8 125 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 OR51A4Q8NGJ6 313 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 FCAMRQ8WWV6 532 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 PIGTQ969N2 578 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 RFT1Q96AA3 541 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 FAM3DQ96BQ1 224 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 SGK3Q96BR1 496 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 REEP6Q96HR9 211 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 FAM71F1Q96KD3 344 aaPredicted RBP6.94□□□□□ -1.3
VPS39-213ENST00000570062 URM1Q9BTM9 101 aaKnown RBP6.94□□□□□ -1.3
VPS39-213ENST00000570062 CHST5Q9GZS9 411 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 CST11Q9H112 138 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 OR10A4Q9H209 315 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 C12orf49Q9H741 205 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 RHBDL2Q9NX52 303 aa6.94□□□□□ -1.3
VPS39-213ENST00000570062 TAS2R4Q9NYW5 299 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms