RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 RUSC1-AS1Q66K80 236 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 OR2T5Q6IEZ7 315 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 SLC16A9Q7RTY1 509 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 FAM90A1Q86YD7 464 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 C11orf53Q8IXP5 236 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 OR2T29Q8NH02 315 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 SGK3Q96BR1 496 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 WDFY2Q96P53 400 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 TBX15Q96SF7 602 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 REEP1Q9H902 201 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 KIF17Q9P2E2 1029 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 SAMHD1Q9Y3Z3 626 aaKnown RBP13.32□□□□□ -0.28
CLN3-229ENST00000567963 hCG_1807616A0A1W2PRN6 198 aa13.31□□□□□ -0.28
CLN3-229ENST00000567963 FAM181BA6NEQ2 426 aa13.31□□□□□ -0.28
CLN3-229ENST00000567963 ANKRD30BLA7E2S9 258 aa13.31□□□□□ -0.28
CLN3-229ENST00000567963 TBX1O43435 398 aa13.31□□□□□ -0.28
CLN3-229ENST00000567963 FCN3O75636 299 aa13.31□□□□□ -0.28
CLN3-229ENST00000567963 IFNGP01579 166 aa13.31□□□□□ -0.28
CLN3-229ENST00000567963 MS4A2Q01362 244 aa13.31□□□□□ -0.28
CLN3-229ENST00000567963 EIF2B1Q14232 305 aaKnown RBP13.31□□□□□ -0.28
CLN3-229ENST00000567963 TRIM25Q14258 630 aaKnown RBP13.31□□□□□ -0.28
CLN3-229ENST00000567963 C11orf91Q3C1V1 193 aa13.31□□□□□ -0.28
CLN3-229ENST00000567963 LCN8Q6JVE9 175 aa13.31□□□□□ -0.28
CLN3-229ENST00000567963 DPY19L4Q7Z388 723 aa13.31□□□□□ -0.28
CLN3-229ENST00000567963 DHFR2Q86XF0 187 aa13.31□□□□□ -0.28
CLN3-229ENST00000567963 ARHGAP24Q8N264 748 aa13.31□□□□□ -0.28
CLN3-229ENST00000567963 OR8S1Q8NH09 359 aa13.31□□□□□ -0.28
CLN3-229ENST00000567963 REEP6Q96HR9 211 aa13.31□□□□□ -0.28
CLN3-229ENST00000567963 MUC13Q9H3R2 512 aa13.31□□□□□ -0.28
CLN3-229ENST00000567963 TOR3AQ9H497 397 aa13.31□□□□□ -0.28
CLN3-229ENST00000567963 CMC2Q9NRP2 79 aa13.31□□□□□ -0.28
CLN3-229ENST00000567963 KAAG1Q9UBP8 84 aa13.31□□□□□ -0.28
CLN3-229ENST00000567963 MMP24Q9Y5R2 645 aa13.31□□□□□ -0.28
CLN3-229ENST00000567963 RIIAD1A6NNX1 92 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 DVL1O14640 695 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 ANXA2P07355 339 aaKnown RBP13.3□□□□□ -0.28
CLN3-229ENST00000567963 ZNF3P17036 446 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 HSD11B1P28845 292 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 POU4F2Q12837 409 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 TIGD6Q17RP2 521 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 FAM98BQ52LJ0 330 aaKnown RBP13.3□□□□□ -0.28
CLN3-229ENST00000567963 METTL11BQ5VVY1 283 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 CD300LDQ6UXZ3 194 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 BTN2A1Q7KYR7 527 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 RHOUQ7L0Q8 258 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 PRSS45Q7RTY3 260 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 WDR86Q86TI4 376 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 RNF133Q8WVZ7 376 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 GATAD2BQ8WXI9 593 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 FAM71F1Q96KD3 344 aaPredicted RBP13.3□□□□□ -0.28
CLN3-229ENST00000567963 INTS14Q96SY0 518 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 NIPSNAP1Q9BPW8 284 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 ABHD6Q9BV23 337 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 SIRPDQ9H106 197 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 SP140LQ9H930 580 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 MED20Q9H944 212 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 RNPEPL1Q9HAU8 725 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 TNFRSF19Q9NS68 423 aa13.3□□□□□ -0.28
CLN3-229ENST00000567963 IGHV3OR15-7A0A075B7D8 119 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 FAM183AA6NL82 134 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 ECDO95905 644 aaPredicted RBP13.29□□□□□ -0.28
CLN3-229ENST00000567963 APOC1P02654 83 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 MUC1P15941 1255 aaPredicted RBP13.29□□□□□ -0.28
CLN3-229ENST00000567963 GRK5P34947 590 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 ARF6P62330 175 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 PDCD1Q15116 288 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 FIP1L1Q6UN15 594 aaKnown RBP13.29□□□□□ -0.28
CLN3-229ENST00000567963 TREML4Q6UXN2 200 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 ERI1Q8IV48 349 aaKnown RBP13.29□□□□□ -0.28
CLN3-229ENST00000567963 TMEM86BQ8N661 226 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 OR1M1Q8NGA1 313 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 OR52H1Q8NGJ2 320 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 OR6N2Q8NGY6 317 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 NSL1Q96IY1 281 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 CHIAQ9BZP6 476 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 MARCH7Q9H992 704 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 ACOXLQ9NUZ1 547 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 ZNF319Q9P2F9 582 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 A0A1B0GUS0 222 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 hCG_38984A0A1B0GV85 526 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 KCNAB3O43448 404 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 TIPRLO75663 272 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 CRYBA1P05813 215 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 MELTFP08582 738 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 GSTT1P30711 240 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 GSK3AP49840 483 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 ZNF121P58317 390 aaPredicted RBP13.29□□□□□ -0.28
CLN3-229ENST00000567963 MICBQ29980 383 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 KLHL12Q53G59 568 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 FAM57BQ71RH2 274 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 SHFQ7M4L6 423 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 OR10G2Q8NGC3 310 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 TEX47Q8TBZ9 253 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 LRRC29Q8WV35 223 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 AMELYQ99218 206 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 FEVQ99581 238 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 PPP1R3EQ9H7J1 279 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 CNTD2Q9H8S5 307 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 DNAJC27Q9NZQ0 273 aa13.29□□□□□ -0.28
CLN3-229ENST00000567963 POMT1Q9Y6A1 747 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms