RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 A0A1B0GWJ7 208 aa18.51■□□□□ 0.55
SNX1-210ENST00000560260 PLSCR5A0PG75 271 aa18.51■□□□□ 0.55
SNX1-210ENST00000560260 OR4C45A6NMZ5 311 aa18.51■□□□□ 0.55
SNX1-210ENST00000560260 H3BSH0 61 aa18.51■□□□□ 0.55
SNX1-210ENST00000560260 ADH4P08319 380 aa18.51■□□□□ 0.55
SNX1-210ENST00000560260 CFL1P23528 166 aaKnown RBP18.51■□□□□ 0.55
SNX1-210ENST00000560260 ART1P52961 327 aa18.51■□□□□ 0.55
SNX1-210ENST00000560260 HNRNPA0Q13151 305 aaKnown RBP18.51■□□□□ 0.55
SNX1-210ENST00000560260 ALKBH1Q13686 389 aaKnown RBP18.51■□□□□ 0.55
SNX1-210ENST00000560260 TSTQ16762 297 aaKnown RBP18.51■□□□□ 0.55
SNX1-210ENST00000560260 KLBQ86Z14 1044 aa18.51■□□□□ 0.55
SNX1-210ENST00000560260 EGFL6Q8IUX8 553 aa18.51■□□□□ 0.55
SNX1-210ENST00000560260 PLPP7Q8NBV4 271 aa18.51■□□□□ 0.55
SNX1-210ENST00000560260 OR10AD1Q8NGE0 317 aa18.51■□□□□ 0.55
SNX1-210ENST00000560260 DVL3Q92997 716 aaPredicted RBP18.51■□□□□ 0.55
SNX1-210ENST00000560260 MYDGFQ969H8 173 aa18.51■□□□□ 0.55
SNX1-210ENST00000560260 CXXC4Q9H2H0 198 aa18.51■□□□□ 0.55
SNX1-210ENST00000560260 CYSLTR2Q9NS75 346 aa18.51■□□□□ 0.55
SNX1-210ENST00000560260 ZNF391Q9UJN7 358 aa18.51■□□□□ 0.55
SNX1-210ENST00000560260 ITGB1BP2Q9UKP3 347 aa18.51■□□□□ 0.55
SNX1-210ENST00000560260 SIRT4Q9Y6E7 314 aaPredicted RBP18.51■□□□□ 0.55
SNX1-210ENST00000560260 HPXP02790 462 aa18.5■□□□□ 0.55
SNX1-210ENST00000560260 CCL1P22362 96 aa18.5■□□□□ 0.55
SNX1-210ENST00000560260 LIPAP38571 399 aa18.5■□□□□ 0.55
SNX1-210ENST00000560260 EFNA4P52798 201 aa18.5■□□□□ 0.55
SNX1-210ENST00000560260 MED21Q13503 144 aa18.5■□□□□ 0.55
SNX1-210ENST00000560260 RNLSQ5VYX0 342 aa18.5■□□□□ 0.55
SNX1-210ENST00000560260 TMPRSS11AQ6ZMR5 421 aa18.5■□□□□ 0.55
SNX1-210ENST00000560260 Q6ZSR3 168 aa18.5■□□□□ 0.55
SNX1-210ENST00000560260 COMMD2Q86X83 199 aa18.5■□□□□ 0.55
SNX1-210ENST00000560260 RDH10Q8IZV5 341 aa18.5■□□□□ 0.55
SNX1-210ENST00000560260 NANOGP1Q8N7R0 232 aa18.5■□□□□ 0.55
SNX1-210ENST00000560260 RPS4Y2Q8TD47 263 aa18.5■□□□□ 0.55
SNX1-210ENST00000560260 GATAD2BQ8WXI9 593 aa18.5■□□□□ 0.55
SNX1-210ENST00000560260 ELMOD3Q96FG2 381 aa18.5■□□□□ 0.55
SNX1-210ENST00000560260 MYCBPQ99417 103 aaPredicted RBP18.5■□□□□ 0.55
SNX1-210ENST00000560260 CDCA4Q9BXL8 241 aa18.5■□□□□ 0.55
SNX1-210ENST00000560260 RAB1BQ9H0U4 201 aa18.5■□□□□ 0.55
SNX1-210ENST00000560260 CHCHD3Q9NX63 227 aaKnown RBP18.5■□□□□ 0.55
SNX1-210ENST00000560260 LSM2Q9Y333 95 aaKnown RBP18.5■□□□□ 0.55
SNX1-210ENST00000560260 LOC107986453A0A1B0GWG9 222 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 RGS10O43665 173 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 LMX1BO60663 402 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 HLA-DPB1P04440 258 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 TGM4P49221 684 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 CCR9P51686 369 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 GBX2P52951 348 aaPredicted RBP18.49■□□□□ 0.55
SNX1-210ENST00000560260 CCL8P80075 99 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 OR2Z1Q8NG97 314 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 OR14K1Q8NGZ2 314 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 OR10AC1Q8NH08 325 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 NKIRAS2Q9NYR9 191 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 MRPL15Q9P015 296 aaKnown RBP18.49■□□□□ 0.55
SNX1-210ENST00000560260 RHBDD3Q9Y3P4 386 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 LRRC42Q9Y546 428 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 LOC390937A0A1W2PQ73 354 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 MYL12BO14950 172 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 F12P00748 615 aaPredicted RBP18.49■□□□□ 0.55
SNX1-210ENST00000560260 CD55P08174 381 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 CA6P23280 308 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 DDOSTP39656 456 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 MRPL28Q13084 256 aaKnown RBP18.49■□□□□ 0.55
SNX1-210ENST00000560260 CDK5R1Q15078 307 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 ZMAT1Q5H9K5 638 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 Q5PR19 223 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 OR13G1Q8NGZ3 307 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 NEU4Q8WWR8 484 aaPredicted RBP18.49■□□□□ 0.55
SNX1-210ENST00000560260 TMEM100Q9NV29 134 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 BABAM2Q9NXR7 383 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 V9GYS6 101 aa18.49■□□□□ 0.55
SNX1-210ENST00000560260 MYO9AB2RTY4 2548 aa18.48■□□□□ 0.55
SNX1-210ENST00000560260 LYNX1G3V0Z9 82 aa18.48■□□□□ 0.55
SNX1-210ENST00000560260 SSX4O60224 188 aa18.48■□□□□ 0.55
SNX1-210ENST00000560260 DHRS3O75911 302 aa18.48■□□□□ 0.55
SNX1-210ENST00000560260 UBCP0CG48 685 aaKnown RBP18.48■□□□□ 0.55
SNX1-210ENST00000560260 LYNX1P0DP58 116 aa18.48■□□□□ 0.55
SNX1-210ENST00000560260 FAHP16930 419 aa18.48■□□□□ 0.55
SNX1-210ENST00000560260 RBMXP38159 391 aaKnown RBP18.48■□□□□ 0.55
SNX1-210ENST00000560260 WNT4P56705 351 aa18.48■□□□□ 0.55
SNX1-210ENST00000560260 TESK1Q15569 626 aa18.48■□□□□ 0.55
SNX1-210ENST00000560260 PCGF3Q3KNV8 242 aa18.48■□□□□ 0.55
SNX1-210ENST00000560260 FAM209AQ5JX71 171 aa18.48■□□□□ 0.55
SNX1-210ENST00000560260 DOK3Q7L591 496 aa18.48■□□□□ 0.55
SNX1-210ENST00000560260 ZNF525Q8N782 197 aa18.48■□□□□ 0.55
SNX1-210ENST00000560260 ZFP41Q8N8Y5 198 aa18.48■□□□□ 0.55
SNX1-210ENST00000560260 OR5M11Q96RB7 305 aa18.48■□□□□ 0.55
SNX1-210ENST00000560260 PDCD1LG2Q9BQ51 273 aa18.48■□□□□ 0.55
SNX1-210ENST00000560260 ADAT1Q9BUB4 502 aaKnown RBP18.48■□□□□ 0.55
SNX1-210ENST00000560260 FGF23Q9GZV9 251 aaPredicted RBP18.48■□□□□ 0.55
SNX1-210ENST00000560260 BARX1Q9HBU1 254 aaPredicted RBP18.48■□□□□ 0.55
SNX1-210ENST00000560260 BLOC1S6Q9UL45 172 aa18.48■□□□□ 0.55
SNX1-210ENST00000560260 ZDHHC8Q9ULC8 765 aa18.48■□□□□ 0.55
SNX1-210ENST00000560260 A0A1B0GVI7 797 aa18.47■□□□□ 0.55
SNX1-210ENST00000560260 F5H5P2 479 aa18.47■□□□□ 0.55
SNX1-210ENST00000560260 OGG1O15527 345 aa18.47■□□□□ 0.55
SNX1-210ENST00000560260 ZFPL1O95159 310 aa18.47■□□□□ 0.55
SNX1-210ENST00000560260 ATP6V1B1P15313 513 aa18.47■□□□□ 0.55
SNX1-210ENST00000560260 MAP2K4P45985 399 aa18.47■□□□□ 0.55
SNX1-210ENST00000560260 MAP2K3P46734 347 aa18.47■□□□□ 0.55
SNX1-210ENST00000560260 GABARAPL2P60520 117 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms