RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 IFNA4P05014 189 aa11.16□□□□□ -0.62
SHMT2-229ENST00000557348 ERCC1P07992 297 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-229ENST00000557348 SNRPBP14678 240 aaKnown RBP11.16□□□□□ -0.62
SHMT2-229ENST00000557348 SSTR2P30874 369 aa11.16□□□□□ -0.62
SHMT2-229ENST00000557348 GDNFP39905 211 aa11.16□□□□□ -0.62
SHMT2-229ENST00000557348 ARG2P78540 354 aa11.16□□□□□ -0.62
SHMT2-229ENST00000557348 ECH1Q13011 328 aa11.16□□□□□ -0.62
SHMT2-229ENST00000557348 FAM27BQ5VT28 67 aa11.16□□□□□ -0.62
SHMT2-229ENST00000557348 GSG1LQ6UXU4 331 aa11.16□□□□□ -0.62
SHMT2-229ENST00000557348 AAED1Q7RTV5 226 aa11.16□□□□□ -0.62
SHMT2-229ENST00000557348 ZFP62Q8NB50 900 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-229ENST00000557348 DACT3Q96B18 629 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-229ENST00000557348 ALX4Q9H161 411 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-229ENST00000557348 RNF122Q9H9V4 155 aa11.16□□□□□ -0.62
SHMT2-229ENST00000557348 PIPOXQ9P0Z9 390 aa11.16□□□□□ -0.62
SHMT2-229ENST00000557348 SLC22A13Q9Y226 551 aa11.16□□□□□ -0.62
SHMT2-229ENST00000557348 PCDHGA9Q9Y5G4 932 aaKnown RBP11.16□□□□□ -0.62
SHMT2-229ENST00000557348 PCNX2A6NKB5 2137 aa11.16□□□□□ -0.62
SHMT2-229ENST00000557348 A0A1B0GTH9 108 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 ZNF98A6NK75 572 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 SLC17A2O00624 439 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 KRT33AO76009 404 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 ZNF708P17019 499 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 MEOX1P50221 254 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 NOVA1P51513 510 aaKnown RBP11.15□□□□□ -0.62
SHMT2-229ENST00000557348 ART1P52961 327 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 CLDN15P56746 228 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 PCBD1P61457 104 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 HIST1H3AP68431 136 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 RTP5Q14D33 572 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 SGCAQ16586 387 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 HIST2H3PS2Q5TEC6 136 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 CORO6Q6QEF8 472 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 DNM1P46Q6ZS02 220 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 HIST2H3AQ71DI3 136 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 SYT9Q86SS6 491 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 TMEM251Q8N6I4 163 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 FCAMRQ8WWV6 532 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 PBOV1Q9GZY1 135 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 HRASLSQ9HDD0 168 aa11.15□□□□□ -0.62
SHMT2-229ENST00000557348 EP300Q09472 2414 aaPredicted RBP11.15□□□□□ -0.63
SHMT2-229ENST00000557348 DMDP11532 3685 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 ANKRD20A5PA0PJZ0 165 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 RAB19A4D1S5 217 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 ZNF891A8MT65 544 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-229ENST00000557348 SYT7O43581 403 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 NDUFB6O95139 128 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 MAS1P04201 325 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 ALDOBP05062 364 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 MELTFP08582 738 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 CST2P09228 141 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 CD37P11049 281 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 MGMTP16455 207 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 IGFBP3P17936 291 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-229ENST00000557348 CXCL2P19875 107 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 LHX2P50458 406 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 SLC10A1Q14973 349 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 RNPS1Q15287 305 aaKnown RBP11.14□□□□□ -0.63
SHMT2-229ENST00000557348 RAB11BQ15907 218 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 ZNF766Q5HY98 468 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 HES5Q5TA89 166 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 TMUB2Q71RG4 321 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 GALNTL5Q7Z4T8 443 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 SERPINA12Q8IW75 414 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 OR51A4Q8NGJ6 313 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 OR10S1Q8NGN2 331 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 OR10AC1Q8NH08 325 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 SPTSSAQ969W0 71 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 GFI1Q99684 422 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 SEC22CQ9BRL7 303 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 LINC00470Q9BZP3 86 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 PIGMQ9H3S5 423 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 MBD2Q9UBB5 411 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 GVINP1Q7Z2Y8 2422 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 AHCTF1Q8WYP5 2266 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 WDR87Q6ZQQ6 2873 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 TRAV8-7A0A075B6U6 113 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 ZNF724A8MTY0 619 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 TM4SF5O14894 197 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 WNT11O96014 354 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 CD3GP09693 182 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 ADRA2CP18825 462 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 KLK2P20151 261 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 CDAP32320 146 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 MAGEA5P43359 124 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 SELENOPP49908 381 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 CLDN18P56856 261 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 PPIAP62937 165 aaKnown RBP11.14□□□□□ -0.63
SHMT2-229ENST00000557348 DGCR2P98153 550 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 ZNF345Q14585 488 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 MICBQ29980 383 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 ODF4Q2M2E3 257 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 LPCAT3Q6P1A2 487 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 DNAAF1Q8NEP3 725 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 OR5D14Q8NGL3 314 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 MARC2Q969Z3 335 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 NABP1Q96AH0 204 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 HAVCR1Q96D42 359 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 RBM24Q9BX46 236 aaKnown RBP11.14□□□□□ -0.63
SHMT2-229ENST00000557348 NOX3Q9HBY0 568 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms