RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 OR1F12Q8NHA8 337 aa11.13□□□□□ -0.63
VIPAS39-206ENST00000553888 PLEKHA1Q9HB21 404 aa11.13□□□□□ -0.63
VIPAS39-206ENST00000553888 NOX3Q9HBY0 568 aa11.13□□□□□ -0.63
VIPAS39-206ENST00000553888 NEK6Q9HC98 313 aa11.13□□□□□ -0.63
VIPAS39-206ENST00000553888 MAP1BP46821 2468 aaKnown RBP11.13□□□□□ -0.63
VIPAS39-206ENST00000553888 GMDSO60547 372 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 RAB3AP20336 220 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 GIFP27352 417 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 CBX5P45973 191 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 KLF9Q13886 244 aaPredicted RBP11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 SF3B4Q15427 424 aaKnown RBP eCLIP11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 IGFL2Q6UWQ7 119 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 GCNT2Q8N0V5 402 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 ACBD4Q8NC06 268 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 OR6M1Q8NGM8 313 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 SGK3Q96BR1 496 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 CMBLQ96DG6 245 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 BEX2Q9BXY8 128 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 GHITMQ9H3K2 345 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 TMEM138Q9NPI0 162 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 A0A1W2PP11 408 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 LOC390937A0A1W2PQ73 354 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 GGT3PA6NGU5 568 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 GSTZ1O43708 216 aaPredicted RBP11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 YES1P07947 543 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 CCL1P22362 96 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 CFPP27918 469 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 SLC6A1P30531 599 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 OR3A4PP47883 348 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 UNC119Q13432 240 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 PABPC1L2AQ5JQF8 200 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 ZNF529Q6P280 563 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 DOK3Q7L591 496 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 MCEMP1Q8IX19 187 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 BCO1Q9HAY6 547 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 EMC3Q9P0I2 261 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 OR6C6A6NF89 314 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 SLC22A20A6NK97 555 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 TTLL8A6PVC2 850 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 CTDSPLO15194 276 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 XRCC3O43542 346 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 IGLV3-1P01715 115 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 LCATP04180 440 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 MMP7P09237 267 aaPredicted RBP11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 CD37P11049 281 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 ACKR3P25106 362 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 NKX2-5P52952 324 aaPredicted RBP11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 TATDN3Q17R31 274 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 PLA1AQ53H76 456 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 C1orf100Q5SVJ3 147 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 SFRP4Q6FHJ7 346 aaPredicted RBP11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 ZNF627Q7L945 461 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 INTS1Q8N201 2190 aaKnown RBP11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 PAQR4Q8N4S7 273 aaPredicted RBP11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 DUSP18Q8NEJ0 188 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 SPTSSAQ969W0 71 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 APH1AQ96BI3 265 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 ZC3HAV1LQ96H79 300 aaKnown RBP11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 TAAR6Q96RI8 345 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 MRI1Q9BV20 369 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 PIGLQ9Y2B2 252 aa11.12□□□□□ -0.63
VIPAS39-206ENST00000553888 WIPF3A6NGB9 483 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 GABARAPH6UMI1 98 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 SULT1B1O43704 296 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 SCGB1D2O95969 90 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 HCKP08631 526 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 CCNOP22674 350 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 ZNF93P35789 620 aaPredicted RBP11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 BAIAP2L2Q6UXY1 529 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 AKAP14Q86UN6 197 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 ZNF100Q8IYN0 542 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 FCAMRQ8WWV6 532 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 SORCS2Q96PQ0 1159 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 UPB1Q9UBR1 384 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 ALG5Q9Y673 324 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 MEGF11A6BM72 1044 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 ZNF587BE7ETH6 402 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 LDLRAD4O15165 306 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 EIF2B2P49770 351 aaKnown RBP11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 SCRN3Q0VDG4 424 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 PMPCAQ10713 525 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 UBE2V2Q15819 145 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 CRIP3Q6Q6R5 217 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 ADGRE4PQ86SQ3 457 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 ANGPTL5Q86XS5 388 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 NKAIN3Q8N8D7 197 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 BEX1Q9HBH7 125 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 NUDT15Q9NV35 164 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 TIMM10BQ9Y5J6 103 aa11.11□□□□□ -0.63
VIPAS39-206ENST00000553888 PROB1E7EW31 1015 aa11.1□□□□□ -0.63
VIPAS39-206ENST00000553888 CPN1P15169 458 aa11.1□□□□□ -0.63
VIPAS39-206ENST00000553888 AGTR1P30556 359 aa11.1□□□□□ -0.63
VIPAS39-206ENST00000553888 TNK1Q13470 666 aa11.1□□□□□ -0.63
VIPAS39-206ENST00000553888 AWAT2Q6E213 333 aa11.1□□□□□ -0.63
VIPAS39-206ENST00000553888 PIGTQ969N2 578 aa11.1□□□□□ -0.63
VIPAS39-206ENST00000553888 METTL17Q9H7H0 456 aaPredicted RBP11.1□□□□□ -0.63
VIPAS39-206ENST00000553888 B3GNT2Q9NY97 397 aa11.1□□□□□ -0.63
VIPAS39-206ENST00000553888 SPTBN4Q9H254 2564 aa11.1□□□□□ -0.63
VIPAS39-206ENST00000553888 TRAV17A0A0B4J275 112 aa11.1□□□□□ -0.63
VIPAS39-206ENST00000553888 ZNF724A8MTY0 619 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms