RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ZNF391Q9UJN7 358 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 ZNF175Q9Y473 711 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 C7orf66A4D0T2 115 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 TMEM14DPA8MWL7 114 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 GMDSO60547 372 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 HCKP08631 526 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 H2AFB2P0C5Z0 115 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 VSIG8P0DPA2 414 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 FAUP35544 74 aaKnown RBP23■■□□□ 1.27
CCDC88C-205ENST00000553403 SFRP5Q5T4F7 317 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 MRPS28Q9Y2Q9 187 aaKnown RBP23■■□□□ 1.27
CCDC88C-205ENST00000553403 TRAV6A0A075B6T7 132 aa22.99■■□□□ 1.27
CCDC88C-205ENST00000553403 IGKV1-9A0A0C4DH69 117 aa22.99■■□□□ 1.27
CCDC88C-205ENST00000553403 RAB25P57735 213 aa22.99■■□□□ 1.27
CCDC88C-205ENST00000553403 UNC119Q13432 240 aa22.99■■□□□ 1.27
CCDC88C-205ENST00000553403 OR56B4Q8NH76 319 aa22.99■■□□□ 1.27
CCDC88C-205ENST00000553403 NUDT16L1Q9BRJ7 211 aaKnown RBP22.99■■□□□ 1.27
CCDC88C-205ENST00000553403 CHST5Q9GZS9 411 aa22.99■■□□□ 1.27
CCDC88C-205ENST00000553403 UPB1Q9UBR1 384 aa22.99■■□□□ 1.27
CCDC88C-205ENST00000553403 WASF3Q9UPY6 502 aa22.99■■□□□ 1.27
CCDC88C-205ENST00000553403 UBBP0CG47 229 aa22.98■■□□□ 1.27
CCDC88C-205ENST00000553403 GSK3AP49840 483 aa22.98■■□□□ 1.27
CCDC88C-205ENST00000553403 HGFACQ04756 655 aa22.98■■□□□ 1.27
CCDC88C-205ENST00000553403 PCGF3Q3KNV8 242 aa22.98■■□□□ 1.27
CCDC88C-205ENST00000553403 UNQ6494/PRO21346Q6UXR6 183 aa22.98■■□□□ 1.27
CCDC88C-205ENST00000553403 RGCCQ9H4X1 137 aa22.98■■□□□ 1.27
CCDC88C-205ENST00000553403 ZNF224Q9NZL3 707 aa22.98■■□□□ 1.27
CCDC88C-205ENST00000553403 MYEF2Q9P2K5 600 aaKnown RBP22.98■■□□□ 1.27
CCDC88C-205ENST00000553403 KLK13Q9UKR3 277 aa22.98■■□□□ 1.27
CCDC88C-205ENST00000553403 PIGLQ9Y2B2 252 aa22.98■■□□□ 1.27
CCDC88C-205ENST00000553403 LCATP04180 440 aa22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 LPLP06858 475 aa22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 PSMB1P20618 241 aaKnown RBP22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 RRAS2P62070 204 aaPredicted RBP22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 PMP22Q01453 160 aa22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 GUCA2AQ02747 115 aa22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 TMEM255AQ5JRV8 349 aa22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 SFRP4Q6FHJ7 346 aaPredicted RBP22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 NUFIP2Q7Z417 695 aaKnown RBP22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 ZNF100Q8IYN0 542 aa22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 AKAP1Q92667 903 aaKnown RBP eCLIP22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 REEP6Q96HR9 211 aa22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 CHD8Q9HCK8 2581 aa22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 SLC22A20A6NK97 555 aa22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 FCGR2AP12318 317 aa22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 ZNF24P17028 368 aa22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 ACTBP60709 375 aa22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 ACTG1P63261 375 aa22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 PABPC1L2AQ5JQF8 200 aa22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 GLIPR1L1Q6UWM5 242 aa22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 SEMA6DQ8NFY4 1073 aa22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 SEH1LQ96EE3 360 aa22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 MSRB2Q9Y3D2 182 aa22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 KCNMB2Q9Y691 235 aa22.97■■□□□ 1.27
CCDC88C-205ENST00000553403 A0A0A6YYJ9 748 aa22.96■■□□□ 1.27
CCDC88C-205ENST00000553403 RAB27BO00194 218 aa22.96■■□□□ 1.27
CCDC88C-205ENST00000553403 FAHP16930 419 aa22.96■■□□□ 1.27
CCDC88C-205ENST00000553403 MOGAT2Q3SYC2 334 aa22.96■■□□□ 1.27
CCDC88C-205ENST00000553403 PNLDC1Q8NA58 520 aaKnown RBP22.96■■□□□ 1.27
CCDC88C-205ENST00000553403 KCNG3Q8TAE7 436 aa22.96■■□□□ 1.27
CCDC88C-205ENST00000553403 SPACA5Q96QH8 159 aa22.96■■□□□ 1.27
CCDC88C-205ENST00000553403 GAL3ST1Q99999 423 aa22.96■■□□□ 1.27
CCDC88C-205ENST00000553403 C20orf85Q9H1P6 137 aa22.96■■□□□ 1.27
CCDC88C-205ENST00000553403 GHRLQ9UBU3 117 aa22.96■■□□□ 1.27
CCDC88C-205ENST00000553403 C1QTNF9BB2RNN3 333 aa22.95■■□□□ 1.26
CCDC88C-205ENST00000553403 C1QTNF9P0C862 333 aa22.95■■□□□ 1.26
CCDC88C-205ENST00000553403 COX5BP10606 129 aa22.95■■□□□ 1.26
CCDC88C-205ENST00000553403 FAM189A2Q15884 450 aa22.95■■□□□ 1.26
CCDC88C-205ENST00000553403 RNF144BQ7Z419 303 aa22.95■■□□□ 1.26
CCDC88C-205ENST00000553403 ZNF101Q8IZC7 436 aa22.95■■□□□ 1.26
CCDC88C-205ENST00000553403 ACBD4Q8NC06 268 aa22.95■■□□□ 1.26
CCDC88C-205ENST00000553403 AQP3Q92482 292 aa22.95■■□□□ 1.26
CCDC88C-205ENST00000553403 ITFG2Q969R8 447 aa22.95■■□□□ 1.26
CCDC88C-205ENST00000553403 C1orf147Q96MC9 270 aaPredicted RBP22.95■■□□□ 1.26
CCDC88C-205ENST00000553403 GPER1Q99527 375 aa22.95■■□□□ 1.26
CCDC88C-205ENST00000553403 PRDM14Q9GZV8 571 aa22.95■■□□□ 1.26
CCDC88C-205ENST00000553403 GHITMQ9H3K2 345 aa22.95■■□□□ 1.26
CCDC88C-205ENST00000553403 ZNF107Q9UII5 783 aaPredicted RBP22.95■■□□□ 1.26
CCDC88C-205ENST00000553403 TGM6O95932 706 aa22.94■■□□□ 1.26
CCDC88C-205ENST00000553403 CHRM2P08172 466 aa22.94■■□□□ 1.26
CCDC88C-205ENST00000553403 ALDH3B1P43353 468 aa22.94■■□□□ 1.26
CCDC88C-205ENST00000553403 OR3A4PP47883 348 aa22.94■■□□□ 1.26
CCDC88C-205ENST00000553403 RIPPLY1Q0D2K3 151 aa22.94■■□□□ 1.26
CCDC88C-205ENST00000553403 UBE2V2Q15819 145 aa22.94■■□□□ 1.26
CCDC88C-205ENST00000553403 ZNF260Q3ZCT1 412 aa22.94■■□□□ 1.26
CCDC88C-205ENST00000553403 MCUBQ9NWR8 336 aa22.94■■□□□ 1.26
CCDC88C-205ENST00000553403 A8MV72 311 aaPredicted RBP22.93■■□□□ 1.26
CCDC88C-205ENST00000553403 AKAIN1P0CW23 69 aa22.93■■□□□ 1.26
CCDC88C-205ENST00000553403 AGTR1P30556 359 aa22.93■■□□□ 1.26
CCDC88C-205ENST00000553403 KISS1Q15726 138 aa22.93■■□□□ 1.26
CCDC88C-205ENST00000553403 GSG1Q2KHT4 349 aa22.93■■□□□ 1.26
CCDC88C-205ENST00000553403 TCTE3Q8IZS6 198 aa22.93■■□□□ 1.26
CCDC88C-205ENST00000553403 ZBTB8BQ8NAP8 495 aaPredicted RBP22.93■■□□□ 1.26
CCDC88C-205ENST00000553403 TMEM229BQ8NBD8 167 aa22.93■■□□□ 1.26
CCDC88C-205ENST00000553403 MOV10Q9HCE1 1003 aaKnown RBP22.93■■□□□ 1.26
CCDC88C-205ENST00000553403 MELTFP08582 738 aa22.93■■□□□ 1.26
CCDC88C-205ENST00000553403 GTF2F2P13984 249 aa22.93■■□□□ 1.26
CCDC88C-205ENST00000553403 FAPQ12884 760 aa22.93■■□□□ 1.26
CCDC88C-205ENST00000553403 ZFP69Q49AA0 526 aa22.93■■□□□ 1.26
CCDC88C-205ENST00000553403 OR2AE1Q8NHA4 323 aa22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms