RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 FAM122BQ7Z309 247 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 NUP54Q7Z3B4 507 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 ATG4DQ86TL0 474 aaPredicted RBP13.05□□□□□ -0.32
HOXC11-202ENST00000546378 TMEM217Q8N7C4 229 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 OR4A4PQ8NGN8 299 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 OR5H2Q8NGV7 314 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 RAB3CQ96E17 227 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 WNT16Q9UBV4 365 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 RALGAPA1Q6GYQ0 2036 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 C1orf196B1AJZ1 125 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 PRSS44E7EML9 344 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 TPPPO94811 219 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 KLK2P20151 261 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 LPAR6P43657 344 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 RPS10P46783 165 aaKnown RBP13.05□□□□□ -0.32
HOXC11-202ENST00000546378 RGS19P49795 217 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 MFAP5Q13361 173 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 IL10RAQ13651 578 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 MICBQ29980 383 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 NAXDQ8IW45 347 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 TAF9BQ9HBM6 251 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 R4GN57 208 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 PCDH15Q96QU1 1955 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 C3orf80F5H4A9 247 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 MASP2O00187 686 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 BLVRBP30043 206 aaPredicted RBP13.05□□□□□ -0.32
HOXC11-202ENST00000546378 SLC35D3Q5M8T2 416 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 SLC39A7Q92504 469 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 PRRT1Q99946 306 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 LYRM4Q9HD34 91 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 CTSFQ9UBX1 484 aa13.05□□□□□ -0.32
HOXC11-202ENST00000546378 NXT1Q9UKK6 140 aaKnown RBP13.05□□□□□ -0.32
HOXC11-202ENST00000546378 C5orf63A6NC05 138 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 GPR37O15354 613 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 TSPAN15O95858 294 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 PDGFBP01127 241 aaPredicted RBP13.04□□□□□ -0.32
HOXC11-202ENST00000546378 RABIFP47224 123 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 RPL27P61353 136 aaKnown RBP13.04□□□□□ -0.32
HOXC11-202ENST00000546378 COL19A1Q14993 1142 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 EEF1A1P5Q5VTE0 462 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 C1orf140Q5VVS0 124 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 RNF141Q8WVD5 230 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 ZNF285Q96NJ3 590 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 MAGT1Q9H0U3 335 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 GHRLQ9UBU3 117 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 SUSD2Q9UGT4 822 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 HIF3AQ9Y2N7 669 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 MRPS28Q9Y2Q9 187 aaKnown RBP13.04□□□□□ -0.32
HOXC11-202ENST00000546378 BET1O15155 118 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 SNAPINO95295 136 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 ITGB2P05107 769 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 VSIG8P0DPA2 414 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 PNMTP11086 282 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 CEBPEQ15744 281 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 CHRFAM7AQ494W8 412 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 CLEC18BQ6UXF7 455 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 OR2AJ1Q8NGZ0 328 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 MFSD8Q8NHS3 518 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 NT5CQ8TCD5 201 aa13.04□□□□□ -0.32
HOXC11-202ENST00000546378 NECAB3Q96P71 396 aaPredicted RBP13.04□□□□□ -0.32
HOXC11-202ENST00000546378 ZNF106Q9H2Y7 1883 aaKnown RBP13.04□□□□□ -0.32
HOXC11-202ENST00000546378 FER1L5A0AVI2 2057 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 IGHV1OR15-9A0A0B4J2B8 117 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 FAM230AA0A1W2PPH8 454 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 YIF1AO95070 293 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 PATE4P0C8F1 98 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 CCNOP22674 350 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 OR5L1Q8NGL2 311 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 SLC25A43Q8WUT9 341 aaPredicted RBP13.03□□□□□ -0.32
HOXC11-202ENST00000546378 TM4SF19Q96DZ7 209 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 SLC25A21Q9BQT8 299 aaPredicted RBP13.03□□□□□ -0.32
HOXC11-202ENST00000546378 NMNAT2Q9BZQ4 307 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 IFT22Q9H7X7 185 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.03□□□□□ -0.32
HOXC11-202ENST00000546378 ZNF581Q9P0T4 197 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 DOCK10Q96BY6 2186 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 A0A1W2PPC4 97 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 ZNF850A8MQ14 1090 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 STMND1H3BQB6 276 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 H7C1Q1 480 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 OR2F2O95006 317 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 FABP1P07148 127 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 ZNF44P15621 663 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 GPR3P46089 330 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 RAB5BP61020 215 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 SKP2Q13309 424 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 UNC119Q13432 240 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 OR2F1Q13607 317 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 SHDQ96IW2 340 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 OR5B2Q96R09 309 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 GPR84Q9NQS5 396 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 EMC3Q9P0I2 261 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 PCDHGA1Q9Y5H4 931 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 CNOT1A5YKK6 2376 aaKnown RBP13.03□□□□□ -0.32
HOXC11-202ENST00000546378 ZNF727A8MUV8 499 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 NUDT21O43809 227 aaKnown RBP13.03□□□□□ -0.32
HOXC11-202ENST00000546378 AQP8O94778 261 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 CRHP06850 196 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 PNLIPP16233 465 aa13.03□□□□□ -0.32
HOXC11-202ENST00000546378 CAV2P51636 162 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms