RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 NR1H4Q96RI1 486 aaPredicted RBP14.63□□□□□ -0.07
LIG1-204ENST00000542460 COMMD4Q9H0A8 199 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 DYNLRB1Q9NP97 96 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 ST6GALNAC2Q9UJ37 374 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 TACC2O95359 2948 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 RAI1Q7Z5J4 1906 aaPredicted RBP14.62□□□□□ -0.07
LIG1-204ENST00000542460 A0A1B0GVI7 797 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 OVOL3O00110 214 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 SYT7O43581 403 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 ZFPL1O95159 310 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 CD53P19397 219 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 CCL1P22362 96 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 MAP2K3P46734 347 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 PPOXP50336 477 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 ZMAT1Q5H9K5 638 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 RDH10Q8IZV5 341 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 ZNF676Q8N7Q3 588 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 BHLHE23Q8NDY6 225 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 CCDC54Q8NEL0 328 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 CSNK2A3Q8NEV1 391 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 OR56B2PQ8NGI1 322 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 OR5AK2Q8NH90 309 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 FAM71F1Q96KD3 344 aaPredicted RBP14.62□□□□□ -0.07
LIG1-204ENST00000542460 SOX7Q9BT81 388 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 CACNG6Q9BXT2 260 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 CXorf56Q9H5V9 222 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 ACOT13Q9NPJ3 140 aa14.62□□□□□ -0.07
LIG1-204ENST00000542460 SIRT4Q9Y6E7 314 aaPredicted RBP14.62□□□□□ -0.07
LIG1-204ENST00000542460 LOC107986453A0A1B0GWG9 222 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 DHRS3O75911 302 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 ZNF12P17014 697 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 TNK1Q13470 666 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 DMKNQ6E0U4 476 aaPredicted RBP14.61□□□□□ -0.07
LIG1-204ENST00000542460 Q6ZSR3 168 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 FTMTQ8N4E7 242 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 SEMA6DQ8NFY4 1073 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 RPS4Y2Q8TD47 263 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 SMIM19Q96E16 107 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 PDCD1LG2Q9BQ51 273 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 ZNF696Q9H7X3 374 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 MRPL15Q9P015 296 aaKnown RBP14.61□□□□□ -0.07
LIG1-204ENST00000542460 PLEKHA6Q9Y2H5 1048 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 APCP25054 2843 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 ABCA12Q86UK0 2595 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 MYO9AB2RTY4 2548 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 DHRS7CA6NNS2 312 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 H7C417 338 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 NAT2P11245 290 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 CELP19835 753 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 ACHEP22303 614 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 DNASE1P24855 282 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 ACKR3P25106 362 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 ZNF81P51508 661 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 RIPPLY1Q0D2K3 151 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 DOC2BQ14184 412 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 OR14K1Q8NGZ2 314 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 OR13G1Q8NGZ3 307 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 SLC30A2Q9BRI3 323 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 SLC22A4Q9H015 551 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 MSL2Q9HCI7 577 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 ISYNA1Q9NPH2 558 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 TMEM100Q9NV29 134 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 ZDHHC8Q9ULC8 765 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 HHLA2Q9UM44 414 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 V9GYS6 101 aa14.61□□□□□ -0.07
LIG1-204ENST00000542460 CSMD2Q7Z408 3487 aa14.6□□□□□ -0.07
LIG1-204ENST00000542460 ANKRD30BLA7E2S9 258 aa14.6□□□□□ -0.07
LIG1-204ENST00000542460 C17orf100A8MU93 164 aa14.6□□□□□ -0.07
LIG1-204ENST00000542460 PLPP2O43688 288 aa14.6□□□□□ -0.07
LIG1-204ENST00000542460 LILRA1O75019 489 aa14.6□□□□□ -0.07
LIG1-204ENST00000542460 HSMCR30P0CW71 290 aa14.6□□□□□ -0.07
LIG1-204ENST00000542460 CDKN1AP38936 164 aa14.6□□□□□ -0.07
LIG1-204ENST00000542460 SLC3A1Q07837 685 aa14.6□□□□□ -0.07
LIG1-204ENST00000542460 ZBTB37Q5TC79 503 aa14.6□□□□□ -0.07
LIG1-204ENST00000542460 Q6ZR03 302 aa14.6□□□□□ -0.07
LIG1-204ENST00000542460 ZNF367Q7RTV3 350 aa14.6□□□□□ -0.07
LIG1-204ENST00000542460 ZFP41Q8N8Y5 198 aa14.6□□□□□ -0.07
LIG1-204ENST00000542460 TSPAN14Q8NG11 270 aa14.6□□□□□ -0.07
LIG1-204ENST00000542460 GHSRQ92847 366 aa14.6□□□□□ -0.07
LIG1-204ENST00000542460 NINJ1Q92982 152 aa14.6□□□□□ -0.07
LIG1-204ENST00000542460 DIRC2Q96SL1 478 aa14.6□□□□□ -0.07
LIG1-204ENST00000542460 MGLLQ99685 303 aa14.6□□□□□ -0.07
LIG1-204ENST00000542460 VRK1Q99986 396 aaPredicted RBP14.6□□□□□ -0.07
LIG1-204ENST00000542460 CREBBPQ92793 2442 aa14.59□□□□□ -0.07
LIG1-204ENST00000542460 A0A087WXM4 84 aa14.59□□□□□ -0.07
LIG1-204ENST00000542460 A0A1B0GWJ7 208 aa14.59□□□□□ -0.07
LIG1-204ENST00000542460 ZSCAN5BA6NJL1 495 aa14.59□□□□□ -0.07
LIG1-204ENST00000542460 CD1AP06126 327 aa14.59□□□□□ -0.07
LIG1-204ENST00000542460 ERCC1P07992 297 aaPredicted RBP14.59□□□□□ -0.07
LIG1-204ENST00000542460 PCMT1P22061 227 aa14.59□□□□□ -0.07
LIG1-204ENST00000542460 MLLT11Q13015 90 aaPredicted RBP14.59□□□□□ -0.07
LIG1-204ENST00000542460 GPR50Q13585 617 aa14.59□□□□□ -0.07
LIG1-204ENST00000542460 ZCCHC24Q8N2G6 241 aaKnown RBP14.59□□□□□ -0.07
LIG1-204ENST00000542460 FCGR1BQ92637 280 aa14.59□□□□□ -0.07
LIG1-204ENST00000542460 GTF3AQ92664 365 aaKnown RBP14.59□□□□□ -0.07
LIG1-204ENST00000542460 RAB1BQ9H0U4 201 aa14.59□□□□□ -0.07
LIG1-204ENST00000542460 PIGLQ9Y2B2 252 aa14.59□□□□□ -0.07
LIG1-204ENST00000542460 ZNF281Q9Y2X9 895 aa14.59□□□□□ -0.07
LIG1-204ENST00000542460 RHBDD3Q9Y3P4 386 aa14.59□□□□□ -0.07
LIG1-204ENST00000542460 ZNF816-ZNF321PA0A0X1KG74 233 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms