RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 TNFRSF11BO00300 401 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 SLC16A7O60669 478 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 CCNKO75909 580 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 GLSO94925 669 aaPredicted RBP1.58□□□□□ -2.16
CD44-238ENST00000534296 TGM6O95932 706 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 IGKV1-17P01599 117 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 RPN2P04844 631 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 HOXB8P17481 243 aaPredicted RBP1.58□□□□□ -2.16
CD44-238ENST00000534296 MSR1P21757 451 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 GABRR2P28476 465 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 GGT2P36268 569 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 ARR3P36575 388 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 PSMB2P49721 201 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 FABP6P51161 128 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 UBE2E1P51965 193 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 PRKCDQ05655 676 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 SPAG1Q07617 926 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 ADIGQ0VDE8 80 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 CDC20Q12834 499 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 TRDNQ13061 729 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 BTN1A1Q13410 526 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 ILKQ13418 452 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 DOC2AQ14183 400 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 ITIH4Q14624 930 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 MAPRE2Q15555 327 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 TEX30Q5JUR7 227 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 TPRG1LQ5T0D9 272 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 PIP5KL1Q5T9C9 394 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 MFSD14CQ5VZR4 134 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 NTM-AS1Q6ZSK4 140 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 NDUFAF7Q7L592 441 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 CMTM8Q8IZV2 173 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 TRAM1L1Q8N609 369 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 C8orf31Q8N9H6 132 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 GATSQ8NAP1 163 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 NECAP1Q8NC96 275 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 OR4M2Q8NGB6 313 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 OR6K6Q8NGW6 343 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 OR52P1PQ8NH57 321 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 ENKURQ8TC29 256 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 DEDD2Q8WXF8 326 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 ISOC2Q96AB3 205 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 ISG20Q96AZ6 181 aaKnown RBP1.58□□□□□ -2.16
CD44-238ENST00000534296 Q96MT0 163 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 RNF145Q96MT1 663 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 RNF5Q99942 180 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 CHCHD7Q9BUK0 85 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 GGTLC1Q9BX51 225 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 FRMD8P1Q9BZ68 369 aaPredicted RBP1.58□□□□□ -2.16
CD44-238ENST00000534296 RGCCQ9H4X1 137 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 WFDC1Q9HC57 220 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 CRLF2Q9HC73 371 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 CSNK1G1Q9HCP0 422 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 DDX18Q9NVP1 670 aaKnown RBP1.58□□□□□ -2.16
CD44-238ENST00000534296 AHSPQ9NZD4 102 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 SLC17A7Q9P2U7 560 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 TSPOAP1O95153 1857 aa1.58□□□□□ -2.16
CD44-238ENST00000534296 PTPRTO14522 1441 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 FHOD3Q2V2M9 1422 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 ANKRD12Q6UB98 2062 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 GPATCH8Q9UKJ3 1502 aaKnown RBP1.57□□□□□ -2.16
CD44-238ENST00000534296 A0A1B0GTQ1 180 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 A0A1B0GUH1 482 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 ISPDA4D126 451 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 C5orf63A6NC05 138 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 H7C2Y5 167 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 CDRT1O95170 752 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 MBP02144 154 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 CD74P04233 296 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 PGA5P0DJD9 388 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 CTRB1P17538 263 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 RPS5P46782 204 aaKnown RBP1.57□□□□□ -2.16
CD44-238ENST00000534296 PRLHRP49683 370 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 SERPINB8P50452 374 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 NUDT2P50583 147 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 NDUFA8P51970 172 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 CLDN6P56747 220 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 CLDN18P56856 261 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 RPS15AP62244 130 aaKnown RBP1.57□□□□□ -2.16
CD44-238ENST00000534296 C2orf54Q08AI8 447 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 ZNF816Q0VGE8 651 aaPredicted RBP1.57□□□□□ -2.16
CD44-238ENST00000534296 SLC39A6Q13433 755 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 GABRA6Q16445 453 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 LY6EQ16553 131 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 DNLZQ5SXM8 178 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 Q5W150 140 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 IGFL1Q6UW32 110 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 CASP12Q6UXS9 341 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 RAB43Q86YS6 212 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 CBLN2Q8IUK8 224 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 APCDD1LQ8NCL9 501 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 OR56A4Q8NGH8 313 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 SFXN5Q8TD22 340 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 GHSRQ92847 366 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 PEX13Q92968 403 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 SNF8Q96H20 258 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 GPR82Q96P67 336 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 UQCC2Q9BRT2 126 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 TIMM29Q9BSF4 260 aa1.57□□□□□ -2.16
CD44-238ENST00000534296 MARVELD1Q9BSK0 173 aa1.57□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms