RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PAICSP22234 425 aaKnown RBP12.23□□□□□ -0.45
VPS28-215ENST00000531924 HOXA4Q00056 320 aaPredicted RBP12.23□□□□□ -0.45
VPS28-215ENST00000531924 POU4F2Q12837 409 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 PPP1R8Q12972 351 aaKnown RBP12.23□□□□□ -0.45
VPS28-215ENST00000531924 PDCD1Q15116 288 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 MICBQ29980 383 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 MICAQ29983 383 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 GFOD2Q3B7J2 385 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 TEX30Q5JUR7 227 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 OR2T5Q6IEZ7 315 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 ZNF770Q6IQ21 691 aaPredicted RBP12.23□□□□□ -0.45
VPS28-215ENST00000531924 FIP1L1Q6UN15 594 aaKnown RBP12.23□□□□□ -0.45
VPS28-215ENST00000531924 TREML4Q6UXN2 200 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 SLC16A9Q7RTY1 509 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 DPY19L4Q7Z388 723 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 ERI1Q8IV48 349 aaKnown RBP12.23□□□□□ -0.45
VPS28-215ENST00000531924 FTMTQ8N4E7 242 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 SCCPDHQ8NBX0 429 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 OR6N2Q8NGY6 317 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 OR2T29Q8NH02 315 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 OR4Q3Q8NH05 313 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 TEX47Q8TBZ9 253 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 TBC1D15Q8TC07 691 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 ST8SIA4Q92187 359 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 TAF15Q92804 592 aaKnown RBP eCLIP12.23□□□□□ -0.45
VPS28-215ENST00000531924 LHX4Q969G2 390 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 REEP6Q96HR9 211 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 SLITRK2Q9H156 845 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 OR10A2Q9H208 303 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 MAGIXQ9H6Y5 334 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 ARMC1Q9NVT9 282 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 IGHV3OR15-7A0A075B7D8 119 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 B2RBV5 119 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 H3BN98 237 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 DVL1O14640 695 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 CLUP10909 449 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 GSTT1P30711 240 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 NAA10P41227 235 aaPredicted RBP12.22□□□□□ -0.45
VPS28-215ENST00000531924 RAG2P55895 527 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 ARF6P62330 175 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 SNCBQ16143 134 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 PCK2Q16822 640 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 Q6YL49 198 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 FAM57BQ71RH2 274 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 BTN2A1Q7KYR7 527 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 FAM90A1Q86YD7 464 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.22□□□□□ -0.45
VPS28-215ENST00000531924 ARHGAP24Q8N264 748 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 TMEM86BQ8N661 226 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 OR52H1Q8NGJ2 320 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 LRRC29Q8WV35 223 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 SSMEM1Q8WWF3 244 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 SPSB4Q96A44 273 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 LRGUKQ96M69 825 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 INTS14Q96SY0 518 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 MUC13Q9H3R2 512 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 BRD7Q9NPI1 651 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 ACOXLQ9NUZ1 547 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 DNAJC27Q9NZQ0 273 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 FAM96BQ9Y3D0 163 aa12.22□□□□□ -0.45
VPS28-215ENST00000531924 IGHV1-69DA0A0B4J2H0 117 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 CENPVL3A0A0U1RRI6 287 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 ANXA2P2A6NMY6 339 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 TIPRLO75663 272 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 IGHV1-69P01742 117 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 H2BFMP0C1H6 154 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 PSKH1P11801 424 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 MAGEA2P43356 314 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 FAM3AP98173 230 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 C11orf91Q3C1V1 193 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 SHFQ7M4L6 423 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 SLC36A1Q7Z2H8 476 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 PIGWQ7Z7B1 504 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 GCSAMQ8N6F7 178 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 KIR3DL3Q8N743 410 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 CSNK2A3Q8NEV1 391 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 OR10G2Q8NGC3 310 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 SGK3Q96BR1 496 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 PGAM5Q96HS1 289 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 TBX15Q96SF7 602 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 MICU1Q9BPX6 476 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 PAPOLGQ9BWT3 736 aaKnown RBP12.21□□□□□ -0.45
VPS28-215ENST00000531924 DGCR6LQ9BY27 220 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 NMNAT2Q9BZQ4 307 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 PRDM13Q9H4Q3 707 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 CNTD2Q9H8S5 307 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 RNPEPL1Q9HAU8 725 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 SMURF1Q9HCE7 757 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 ONECUT1Q9UBC0 465 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 PRPF19Q9UMS4 504 aaKnown RBP12.21□□□□□ -0.45
VPS28-215ENST00000531924 MMP24Q9Y5R2 645 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 POMT1Q9Y6A1 747 aa12.21□□□□□ -0.45
VPS28-215ENST00000531924 PKD1L1Q8TDX9 2849 aa12.21□□□□□ -0.46
VPS28-215ENST00000531924 FAM183AA6NL82 134 aa12.2□□□□□ -0.46
VPS28-215ENST00000531924 GNGT2O14610 69 aa12.2□□□□□ -0.46
VPS28-215ENST00000531924 TNFRSF13BO14836 293 aaPredicted RBP12.2□□□□□ -0.46
VPS28-215ENST00000531924 MELTFP08582 738 aa12.2□□□□□ -0.46
VPS28-215ENST00000531924 MUC1P15941 1255 aaPredicted RBP12.2□□□□□ -0.46
VPS28-215ENST00000531924 POU1F1P28069 291 aa12.2□□□□□ -0.46
VPS28-215ENST00000531924 GSK3AP49840 483 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms