RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 CHD3Q12873 2000 aaKnown RBP11.94□□□□□ -0.5
USF1-209ENST00000529476 ARID1AO14497 2285 aa11.93□□□□□ -0.5
USF1-209ENST00000529476 C17orf100A8MU93 164 aa11.93□□□□□ -0.5
USF1-209ENST00000529476 P2RY10O00398 339 aa11.93□□□□□ -0.5
USF1-209ENST00000529476 SPRY3O43610 288 aa11.93□□□□□ -0.5
USF1-209ENST00000529476 IGLV3-1P01715 115 aa11.93□□□□□ -0.5
USF1-209ENST00000529476 IGHV4-39P01824 125 aa11.93□□□□□ -0.5
USF1-209ENST00000529476 CFL1P23528 166 aaKnown RBP11.93□□□□□ -0.5
USF1-209ENST00000529476 GTF2A1P52655 376 aaPredicted RBP11.93□□□□□ -0.5
USF1-209ENST00000529476 GBX2P52951 348 aaPredicted RBP11.93□□□□□ -0.5
USF1-209ENST00000529476 ART1P52961 327 aa11.93□□□□□ -0.5
USF1-209ENST00000529476 ATP5J2P56134 94 aa11.93□□□□□ -0.5
USF1-209ENST00000529476 XAF1Q6GPH4 301 aa11.93□□□□□ -0.5
USF1-209ENST00000529476 KLBQ86Z14 1044 aa11.93□□□□□ -0.5
USF1-209ENST00000529476 EGFL6Q8IUX8 553 aa11.93□□□□□ -0.5
USF1-209ENST00000529476 OR52N1Q8NH53 320 aa11.93□□□□□ -0.5
USF1-209ENST00000529476 GATAD2BQ8WXI9 593 aa11.93□□□□□ -0.5
USF1-209ENST00000529476 FAM71F1Q96KD3 344 aaPredicted RBP11.93□□□□□ -0.5
USF1-209ENST00000529476 CDCA4Q9BXL8 241 aa11.93□□□□□ -0.5
USF1-209ENST00000529476 CYSLTR2Q9NS75 346 aa11.93□□□□□ -0.5
USF1-209ENST00000529476 FRRS1LQ9P0K9 344 aa11.93□□□□□ -0.5
USF1-209ENST00000529476 CGGBP1Q9UFW8 167 aaPredicted RBP11.93□□□□□ -0.5
USF1-209ENST00000529476 ZNF391Q9UJN7 358 aa11.93□□□□□ -0.5
USF1-209ENST00000529476 LRRC42Q9Y546 428 aa11.93□□□□□ -0.5
USF1-209ENST00000529476 A0A1B0GTI1 187 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 H0YL77 283 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 H3BSH0 61 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 MYL12BO14950 172 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 RGS10O43665 173 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 LY6HO94772 140 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 LALBAP00709 142 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 IGHV1-46P01743 117 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 MT-ND2P03891 347 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 ACKR3P25106 362 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 LIPAP38571 399 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 MAGEB1P43366 347 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 ALKBH1Q13686 389 aaKnown RBP11.92□□□□□ -0.5
USF1-209ENST00000529476 DOC2BQ14184 412 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 IRF3Q14653 427 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 OR8B8Q15620 311 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 TSTQ16762 297 aaKnown RBP11.92□□□□□ -0.5
USF1-209ENST00000529476 ZMAT1Q5H9K5 638 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 RNLSQ5VYX0 342 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 RDH10Q8IZV5 341 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 NANOGP1Q8N7R0 232 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 ZNF485Q8NCK3 441 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 SLC30A2Q9BRI3 323 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 CCDC90BQ9GZT6 254 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 RAB1BQ9H0U4 201 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 GSX1Q9H4S2 264 aaPredicted RBP11.92□□□□□ -0.5
USF1-209ENST00000529476 BABAM2Q9NXR7 383 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 BLOC1S6Q9UL45 172 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 ERGIC3Q9Y282 383 aa11.92□□□□□ -0.5
USF1-209ENST00000529476 ZNF469Q96JG9 3925 aaPredicted RBP11.92□□□□□ -0.5
USF1-209ENST00000529476 OR4C45A6NMZ5 311 aa11.91□□□□□ -0.5
USF1-209ENST00000529476 MLNRO43193 412 aa11.91□□□□□ -0.5
USF1-209ENST00000529476 HLA-DPB1P04440 258 aa11.91□□□□□ -0.5
USF1-209ENST00000529476 CA6P23280 308 aa11.91□□□□□ -0.5
USF1-209ENST00000529476 EEF1B2P24534 225 aaKnown RBP11.91□□□□□ -0.5
USF1-209ENST00000529476 DDOSTP39656 456 aa11.91□□□□□ -0.5
USF1-209ENST00000529476 TGM4P49221 684 aa11.91□□□□□ -0.5
USF1-209ENST00000529476 CCR9P51686 369 aa11.91□□□□□ -0.5
USF1-209ENST00000529476 EFNA4P52798 201 aa11.91□□□□□ -0.5
USF1-209ENST00000529476 WNT4P56705 351 aa11.91□□□□□ -0.5
USF1-209ENST00000529476 CCL8P80075 99 aa11.91□□□□□ -0.5
USF1-209ENST00000529476 MRPL28Q13084 256 aaKnown RBP11.91□□□□□ -0.5
USF1-209ENST00000529476 LRRC75A-AS1Q8N1F1 130 aa11.91□□□□□ -0.5
USF1-209ENST00000529476 OR2Z1Q8NG97 314 aa11.91□□□□□ -0.5
USF1-209ENST00000529476 OR10AD1Q8NGE0 317 aa11.91□□□□□ -0.5
USF1-209ENST00000529476 OR13G1Q8NGZ3 307 aa11.91□□□□□ -0.5
USF1-209ENST00000529476 DVL3Q92997 716 aaPredicted RBP11.91□□□□□ -0.5
USF1-209ENST00000529476 ELMOD3Q96FG2 381 aa11.91□□□□□ -0.5
USF1-209ENST00000529476 PPP1R3EQ9H7J1 279 aa11.91□□□□□ -0.5
USF1-209ENST00000529476 TMEM100Q9NV29 134 aa11.91□□□□□ -0.5
USF1-209ENST00000529476 MRPL15Q9P015 296 aaKnown RBP11.91□□□□□ -0.5
USF1-209ENST00000529476 ZDHHC8Q9ULC8 765 aa11.91□□□□□ -0.5
USF1-209ENST00000529476 RHBDD3Q9Y3P4 386 aa11.91□□□□□ -0.5
USF1-209ENST00000529476 SIRT4Q9Y6E7 314 aaPredicted RBP11.91□□□□□ -0.5
USF1-209ENST00000529476 A0A1B0GVI7 797 aa11.9□□□□□ -0.5
USF1-209ENST00000529476 LOC107986453A0A1B0GWG9 222 aa11.9□□□□□ -0.5
USF1-209ENST00000529476 LOC390937A0A1W2PQ73 354 aa11.9□□□□□ -0.5
USF1-209ENST00000529476 ANKRD30BLA7E2S9 258 aa11.9□□□□□ -0.5
USF1-209ENST00000529476 DHRS3O75911 302 aa11.9□□□□□ -0.5
USF1-209ENST00000529476 NCR1O76036 304 aa11.9□□□□□ -0.5
USF1-209ENST00000529476 F12P00748 615 aaPredicted RBP11.9□□□□□ -0.5
USF1-209ENST00000529476 HPXP02790 462 aa11.9□□□□□ -0.5
USF1-209ENST00000529476 ERCC1P07992 297 aaPredicted RBP11.9□□□□□ -0.5
USF1-209ENST00000529476 ADH4P08319 380 aa11.9□□□□□ -0.5
USF1-209ENST00000529476 UBCP0CG48 685 aaKnown RBP11.9□□□□□ -0.5
USF1-209ENST00000529476 CCL1P22362 96 aa11.9□□□□□ -0.5
USF1-209ENST00000529476 MAP2K3P46734 347 aa11.9□□□□□ -0.5
USF1-209ENST00000529476 PRRC2AP48634 2157 aaKnown RBP11.9□□□□□ -0.5
USF1-209ENST00000529476 GABARAPL2P60520 117 aa11.9□□□□□ -0.5
USF1-209ENST00000529476 PCGF3Q3KNV8 242 aa11.9□□□□□ -0.5
USF1-209ENST00000529476 SPRNQ5BIV9 151 aa11.9□□□□□ -0.5
USF1-209ENST00000529476 RPL22L1Q6P5R6 122 aaKnown RBP11.9□□□□□ -0.5
USF1-209ENST00000529476 DOK3Q7L591 496 aa11.9□□□□□ -0.5
USF1-209ENST00000529476 PRSS48Q7RTY5 328 aa11.9□□□□□ -0.5
USF1-209ENST00000529476 ZNF676Q8N7Q3 588 aa11.9□□□□□ -0.5
USF1-209ENST00000529476 ZFP41Q8N8Y5 198 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms