RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 OR52A1Q9UKL2 312 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 MYO9AB2RTY4 2548 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 ABCA12Q86UK0 2595 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 IGHV1-18A0A0C4DH31 117 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 A0A1W2PR80 420 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 C5orf49A4QMS7 147 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 TUBAL3A6NHL2 446 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 OR4C45A6NMZ5 311 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 FAM90A27PA6NNH2 459 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 VSTM5A8MXK1 200 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 LOC110117498-PIK3R3F6TDL0 507 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 SERPINA3P01011 423 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 CRYAAP02489 173 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 LCATP04180 440 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 HLA-DPB1P04440 258 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 HSMCR30P0CW71 290 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 CFL1P23528 166 aaKnown RBP6.38□□□□□ -1.39
CD44-228ENST00000528455 PSMB10P40306 273 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 CX3CR1P49238 355 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 ZNF121P58317 390 aaPredicted RBP6.38□□□□□ -1.39
CD44-228ENST00000528455 NANOS3P60323 173 aaKnown RBP6.38□□□□□ -1.39
CD44-228ENST00000528455 YIF1BQ5BJH7 314 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 UNQ9370/PRO34162Q6UXP9 181 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 Q6ZSR3 168 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 PRSS35Q8N3Z0 413 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 OR13F1Q8NGS4 319 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 OR5AK2Q8NH90 309 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 SLC7A6Q92536 515 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 PHYHIPQ92561 330 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 THRSPQ92748 146 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 UFD1Q92890 307 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 APOBEC3DQ96AK3 386 aaPredicted RBP6.38□□□□□ -1.39
CD44-228ENST00000528455 SGK3Q96BR1 496 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 SMIM19Q96E16 107 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 OPALINQ96PE5 141 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 DOK1Q99704 481 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 MED18Q9BUE0 208 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 C1QTNF6Q9BXI9 259 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 BCL2L14Q9BZR8 327 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 PBOV1Q9GZY1 135 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 COMMD4Q9H0A8 199 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 OR10A2Q9H208 303 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 RGCCQ9H4X1 137 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 ESRP2Q9H6T0 727 aaKnown RBP6.38□□□□□ -1.39
CD44-228ENST00000528455 CDH20Q9HBT6 801 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 NOX3Q9HBY0 568 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 ACOXLQ9NUZ1 547 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 STARD10Q9Y365 291 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 GRIP1Q9Y3R0 1128 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 SPEF1Q9Y4P9 236 aa6.38□□□□□ -1.39
CD44-228ENST00000528455 SIRT4Q9Y6E7 314 aaPredicted RBP6.38□□□□□ -1.39
CD44-228ENST00000528455 PRR14LQ5THK1 2151 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 TRDV1A0A1B0GX56 115 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 LOC390937A0A1W2PQ73 354 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 DPRXA6NFQ7 191 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 C19orf84I3L1E1 186 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 XRCC2O43543 280 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 MTRF1O75570 445 aaKnown RBP6.37□□□□□ -1.39
CD44-228ENST00000528455 ZFPL1O95159 310 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 IGLV3-1P01715 115 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 TTRP02766 147 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 RAF1P04049 648 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 AMY2AP04746 511 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 ANXA2P07355 339 aaKnown RBP6.37□□□□□ -1.39
CD44-228ENST00000528455 UBCP0CG48 685 aaKnown RBP6.37□□□□□ -1.39
CD44-228ENST00000528455 MED14OSP0DP75 135 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 PRF1P14222 555 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 CD36P16671 472 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 AMY2BP19961 511 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 CCNOP22674 350 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 NR4A1P22736 598 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 CD40P25942 277 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 PSMB9P28065 219 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 FGF9P31371 208 aaPredicted RBP6.37□□□□□ -1.39
CD44-228ENST00000528455 GABRA5P31644 462 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 LIPAP38571 399 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 DDOSTP39656 456 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 KIR2DL3P43628 341 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 IDH3GP51553 393 aaPredicted RBP6.37□□□□□ -1.39
CD44-228ENST00000528455 NAAAQ02083 359 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 MALLQ13021 153 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 DAZAP2Q15038 168 aaPredicted RBP6.37□□□□□ -1.39
CD44-228ENST00000528455 CDK5R1Q15078 307 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 TSTQ16762 297 aaKnown RBP6.37□□□□□ -1.39
CD44-228ENST00000528455 WDR38Q5JTN6 314 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 BCL2L15Q5TBC7 163 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 LIPKQ5VXJ0 399 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 CD200R1LQ6Q8B3 271 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 PAMR1Q6UXH9 720 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 FAM57BQ71RH2 274 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 KRT74Q7RTS7 529 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 GPR141Q7Z602 305 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 ACBD4Q8NC06 268 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 LINC01560Q8TB33 94 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 GPR148Q8TDV2 347 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 FAM222BQ8WU58 562 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 SPSB4Q96A44 273 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 TMIGD2Q96BF3 282 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 C10orf35Q96D05 121 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 YIPF6Q96EC8 236 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms