RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ZNF420Q8TAQ5 688 aaPredicted RBP2.81□□□□□ -1.96
CD44-217ENST00000525348 DYNC2LI1Q8TCX1 351 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 U2AF1L4Q8WU68 220 aaKnown RBP2.81□□□□□ -1.96
CD44-217ENST00000525348 DCAKDQ8WVC6 231 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 RNF133Q8WVZ7 376 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 C11orf40Q8WZ69 217 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 GHSRQ92847 366 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 STMN2Q93045 179 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 ULK4Q96C45 1275 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 BIRC7Q96CA5 298 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 ISOC1Q96CN7 298 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 TLCD1Q96CP7 247 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 FAF2Q96CS3 445 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 SNRNP40Q96DI7 357 aaKnown RBP2.81□□□□□ -1.96
CD44-217ENST00000525348 CPNE2Q96FN4 548 aaPredicted RBP2.81□□□□□ -1.96
CD44-217ENST00000525348 CERS2Q96G23 380 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 PLEKHF1Q96S99 279 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 ZNF382Q96SR6 550 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 VAT1Q99536 393 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 NPAS2Q99743 824 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 SLC35A5Q9BS91 424 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 TTYH2Q9BSA4 534 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 CHRDL1Q9BU40 450 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 NDUFAF3Q9BU61 184 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 SRRQ9GZT4 340 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 ING2Q9H160 280 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 DCSTAMPQ9H295 470 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 NIPAL2Q9H841 368 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 NANOGQ9H9S0 305 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 TPT1P8Q9HAU6 139 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 IL1RL2Q9HB29 575 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 HRASLSQ9HDD0 168 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 TMEM138Q9NPI0 162 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 VNN3Q9NY84 501 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 METTL1Q9UBP6 276 aaKnown RBP2.81□□□□□ -1.96
CD44-217ENST00000525348 SNX12Q9UMY4 172 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 SSR3Q9UNL2 185 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 SBDSQ9Y3A5 250 aaKnown RBP eCLIP2.81□□□□□ -1.96
CD44-217ENST00000525348 ZMYM6O95789 1325 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 USP47Q96K76 1375 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 E9PCH4 1651 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 IFT172Q9UG01 1749 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 TUBGCP6Q96RT7 1819 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 MYH10P35580 1976 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 CDK5RAP2Q96SN8 1893 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 ECM29Q5VYK3 1845 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 RGPD3A6NKT7 1758 aaPredicted RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 RGPD4Q7Z3J3 1758 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 ARHGEF28Q8N1W1 1705 aaKnown RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 KIAA1551Q9HCM1 1747 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 FMN2Q9NZ56 1722 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 CLTCL1P53675 1640 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 TNS3Q68CZ2 1445 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 CEMIPQ8WUJ3 1361 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 A0A1B0GV72 72 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 PRSS37A4D1T9 235 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 MBLAC1A4D2B0 266 aaPredicted RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 DISC1C4P0D8 188 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 CLDN25C9JDP6 229 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 CDX4O14627 284 aaPredicted RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 AZIN1O14977 448 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 SLC16A4O15374 487 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 TCF21O43680 179 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 AQP8O94778 261 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 SUPT7LO94864 414 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 TNFAIP8O95379 198 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 IFNA5P01569 189 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 MMP1P03956 469 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 FCGR3AP08637 254 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 FOLR1P15328 257 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 SPNP16150 400 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 HIST1H1BP16401 226 aaKnown RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 DRD3P35462 400 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 MDH2P40926 338 aaKnown RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 AQP2P41181 271 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 RBM34P42696 430 aaKnown RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 NOVA1P51513 510 aaKnown RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 WNT4P56705 351 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 KLF3P57682 345 aaPredicted RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 RANP62826 216 aaKnown RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 CXCL6P80162 114 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 TFAMQ00059 246 aaKnown RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 PITPNAQ00169 270 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 EMX2Q04743 252 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 BST2Q10589 180 aaKnown RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 TGIF1Q15583 401 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 OR4D1Q15615 310 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 ACKR1Q16570 336 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 SMIM21Q3B7S5 101 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 UNC50Q53HI1 259 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 RAET1LQ5VY80 246 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 ZNF562Q6V9R5 426 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 Q6ZPB1 254 aaPredicted RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 MRPL52Q86TS9 123 aaKnown RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 SNX29P2Q8IUI4 249 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 ZNF444Q8N0Y2 327 aaPredicted RBP2.8□□□□□ -1.96
CD44-217ENST00000525348 LRRC75A-AS1Q8N1F1 130 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 CERS5Q8N5B7 392 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 PACRGLQ8N7B6 248 aa2.8□□□□□ -1.96
CD44-217ENST00000525348 GVQW1Q8N7I0 195 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms