RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 LUZP6Q538Z0 58 aa1.98□□□□□ -2.09
CD44-215ENST00000525241 TWF2Q6IBS0 349 aaKnown RBP1.98□□□□□ -2.09
CD44-215ENST00000525241 MED27Q6P2C8 311 aa1.98□□□□□ -2.09
CD44-215ENST00000525241 DEGS2Q6QHC5 323 aa1.98□□□□□ -2.09
CD44-215ENST00000525241 OPN5Q6U736 354 aa1.98□□□□□ -2.09
CD44-215ENST00000525241 BZW1Q7L1Q6 419 aaKnown RBP1.98□□□□□ -2.09
CD44-215ENST00000525241 SSX9Q7RTT3 188 aa1.98□□□□□ -2.09
CD44-215ENST00000525241 CTAGE6Q86UF2 777 aa1.98□□□□□ -2.09
CD44-215ENST00000525241 UBAC2Q8NBM4 344 aa1.98□□□□□ -2.09
CD44-215ENST00000525241 TSEN15Q8WW01 171 aaKnown RBP1.98□□□□□ -2.09
CD44-215ENST00000525241 TVP23CQ96ET8 276 aa1.98□□□□□ -2.09
CD44-215ENST00000525241 KCNS3Q9BQ31 491 aa1.98□□□□□ -2.09
CD44-215ENST00000525241 MARVELD1Q9BSK0 173 aa1.98□□□□□ -2.09
CD44-215ENST00000525241 SHANK2-AS3Q9BTD1 123 aa1.98□□□□□ -2.09
CD44-215ENST00000525241 CALN1Q9BXU9 219 aa1.98□□□□□ -2.09
CD44-215ENST00000525241 C20orf96Q9NUD7 363 aaPredicted RBP1.98□□□□□ -2.09
CD44-215ENST00000525241 ZNF391Q9UJN7 358 aa1.98□□□□□ -2.09
CD44-215ENST00000525241 LRRC42Q9Y546 428 aa1.98□□□□□ -2.09
CD44-215ENST00000525241 TEX46H3BTG2 121 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 MFNGO00587 321 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 CACNG3O60359 315 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 CBR3O75828 277 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 HLA-HP01893 362 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 TCP1P17987 556 aaKnown RBP1.97□□□□□ -2.09
CD44-215ENST00000525241 MPV17P39210 176 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 RAB9AP51151 201 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 IFITM3Q01628 133 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 ITIH4Q14624 930 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 STUMQ69YW2 141 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 TMEM53Q6P2H8 277 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 EIF3MQ7L2H7 374 aaKnown RBP1.97□□□□□ -2.09
CD44-215ENST00000525241 DRAM1Q8N682 238 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 ZNF680Q8NEM1 530 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 RERGQ96A58 199 aaPredicted RBP1.97□□□□□ -2.09
CD44-215ENST00000525241 GPR82Q96P67 336 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 PLEKHF2Q9H8W4 249 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 CCNB1IP1Q9NPC3 277 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 RBFOX1Q9NWB1 397 aaKnown RBP1.97□□□□□ -2.09
CD44-215ENST00000525241 RAB20Q9NX57 234 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 RABL2BQ9UNT1 228 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 HES2Q9Y543 173 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 SEC16AO15027 2179 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 UNC79Q9P2D8 2635 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 TSPOAP1O95153 1857 aa1.97□□□□□ -2.09
CD44-215ENST00000525241 COL5A1P20908 1838 aaPredicted RBP1.96□□□□□ -2.1
CD44-215ENST00000525241 A0A1W2PNN7 141 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 MANBAO00462 879 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 BCKDKO14874 412 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 OR7C2O60412 319 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 SLC16A7O60669 478 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 CNMDO75829 334 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 ASGR1P07306 291 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 CD28P10747 220 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 HSPD1P10809 573 aaKnown RBP1.96□□□□□ -2.1
CD44-215ENST00000525241 PRKACBP22694 351 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 PCK1P35558 622 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 RPS15AP62244 130 aaKnown RBP1.96□□□□□ -2.1
CD44-215ENST00000525241 BAMBIQ13145 260 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 ZNF235Q14590 738 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 TBPL2Q6SJ96 375 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 WDR82Q6UXN9 313 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 ZNF547Q8IVP9 402 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 VKORC1L1Q8N0U8 176 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 CCDC148Q8NFR7 591 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 OR2Z1Q8NG97 314 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 OR51F2Q8NH61 342 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 ENKURQ8TC29 256 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 DCAKDQ8WVC6 231 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 RAB1CQ92928 201 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 GPR21Q99679 349 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 BPIFA3Q9BQP9 254 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 SAR1BQ9Y6B6 198 aa1.96□□□□□ -2.1
CD44-215ENST00000525241 A0A0A6YYD5 115 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 M0R1X1 148 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 FCN3O75636 299 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 TRBV12-3P01733 135 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 IFNW1P05000 195 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 RAB5AP20339 215 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 GSTM3P21266 225 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 SLC1A2P43004 574 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 TAS2R43P59537 309 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 KRTAP6-3Q3LI67 103 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 TMPRSS11AQ6ZMR5 421 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 LRP11Q86VZ4 500 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 ZNF664Q8N3J9 261 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 CDS1Q92903 461 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 TEAD3Q99594 435 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 C1orf50Q9BV19 199 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 PIGUQ9H490 435 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 TAS2R5Q9NYW4 299 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 IL37Q9NZH6 218 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 ZNF257Q9Y2Q1 563 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 SHROOM3Q8TF72 1996 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 NSD2O96028 1365 aa1.95□□□□□ -2.1
CD44-215ENST00000525241 SCN4AP35499 1836 aa1.94□□□□□ -2.1
CD44-215ENST00000525241 PRAMEF26H0Y7S4 382 aa1.94□□□□□ -2.1
CD44-215ENST00000525241 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.94□□□□□ -2.1
CD44-215ENST00000525241 NELFEP18615 380 aaKnown RBP1.94□□□□□ -2.1
CD44-215ENST00000525241 NAB1Q13506 487 aa1.94□□□□□ -2.1
CD44-215ENST00000525241 CUL2Q13617 745 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms