RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 SCGB2B2Q4G0G5 96 aa10.56□□□□□ -0.72
NUP54-202ENST00000502850 ATPAF1Q5TC12 328 aaPredicted RBP10.56□□□□□ -0.72
NUP54-202ENST00000502850 B3GNTL1Q67FW5 361 aaPredicted RBP10.56□□□□□ -0.72
NUP54-202ENST00000502850 GLIPR1L1Q6UWM5 242 aa10.56□□□□□ -0.72
NUP54-202ENST00000502850 C6orf15Q6UXA7 325 aaPredicted RBP10.56□□□□□ -0.72
NUP54-202ENST00000502850 Q6ZSR3 168 aa10.56□□□□□ -0.72
NUP54-202ENST00000502850 TMED4Q7Z7H5 227 aa10.56□□□□□ -0.72
NUP54-202ENST00000502850 C20orf196Q8IYI0 205 aa10.56□□□□□ -0.72
NUP54-202ENST00000502850 OR5AS1Q8N127 324 aa10.56□□□□□ -0.72
NUP54-202ENST00000502850 BEST3Q8N1M1 668 aa10.56□□□□□ -0.72
NUP54-202ENST00000502850 OR52H1Q8NGJ2 320 aa10.56□□□□□ -0.72
NUP54-202ENST00000502850 OR14K1Q8NGZ2 314 aa10.56□□□□□ -0.72
NUP54-202ENST00000502850 GNRHR2Q96P88 292 aa10.56□□□□□ -0.72
NUP54-202ENST00000502850 SCGB3A2Q96PL1 93 aa10.56□□□□□ -0.72
NUP54-202ENST00000502850 CITED4Q96RK1 184 aa10.56□□□□□ -0.72
NUP54-202ENST00000502850 GAL3ST1Q99999 423 aa10.56□□□□□ -0.72
NUP54-202ENST00000502850 PROK2Q9HC23 129 aa10.56□□□□□ -0.72
NUP54-202ENST00000502850 KIF25Q9UIL4 384 aa10.56□□□□□ -0.72
NUP54-202ENST00000502850 FOXD3Q9UJU5 478 aaPredicted RBP10.56□□□□□ -0.72
NUP54-202ENST00000502850 FARSAQ9Y285 508 aaKnown RBP10.56□□□□□ -0.72
NUP54-202ENST00000502850 MCRIP1C9JLW8 97 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 LINC01387J3KSC0 135 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 CDC14BO60729 498 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 WDPCPO95876 746 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 PPP3CBP16298 524 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 ENPP1P22413 925 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 CD34P28906 385 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 CASRP41180 1078 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 UBE2MP61081 183 aaKnown RBP10.55□□□□□ -0.72
NUP54-202ENST00000502850 C3P1Q6ZMU1 363 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 PPP1R32Q7Z5V6 425 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 NAA40Q86UY6 237 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 SLC25A42Q86VD7 318 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 NAXDQ8IW45 347 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 ARRDC1Q8N5I2 433 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 STEAP2Q8NFT2 490 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 NABP1Q96AH0 204 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 RAB3CQ96E17 227 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 NKX3-1Q99801 234 aaPredicted RBP10.55□□□□□ -0.72
NUP54-202ENST00000502850 DDA1Q9BW61 102 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 GSX2Q9BZM3 304 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 LPAR5Q9H1C0 372 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 OR10A2Q9H208 303 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 KCNN3Q9UGI6 736 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 ZNF391Q9UJN7 358 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 TCFL5Q9UL49 500 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 ANAPC10Q9UM13 185 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 LOXL2Q9Y4K0 774 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 PCDHGA1Q9Y5H4 931 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 V9GYS6 101 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 EML6Q6ZMW3 1958 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 NCOR2Q9Y618 2525 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 COL27A1Q8IZC6 1860 aaPredicted RBP10.55□□□□□ -0.72
NUP54-202ENST00000502850 RFPL4AA6NLU0 287 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 RFPL4AL1F8VTS6 287 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 MPC2O95563 127 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 SERPINA7P05543 415 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 RPA2P15927 270 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 ABOP16442 354 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 OTX1P32242 354 aaPredicted RBP10.55□□□□□ -0.72
NUP54-202ENST00000502850 OTX2P32243 289 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 SLC6A9P48067 706 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 H2BFSP57053 126 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 CXADRP78310 365 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 SRSF4Q08170 494 aaKnown RBP10.55□□□□□ -0.72
NUP54-202ENST00000502850 SCRN3Q0VDG4 424 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 ENDOGQ14249 297 aaKnown RBP10.55□□□□□ -0.72
NUP54-202ENST00000502850 PPA1Q15181 289 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 RAB35Q15286 201 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 PDSS1Q5T2R2 415 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 FAM27BQ5VT28 67 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 H3F3CQ6NXT2 135 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 GPR137CQ8N3F9 429 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 OR5M8Q8NGP6 311 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 OR13C8Q8NGS7 320 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 OR14L1PQ8NHC6 308 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 TAAR9Q96RI9 348 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 S100A13Q99584 98 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 SLC6A7Q99884 636 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 RBM24Q9BX46 236 aaKnown RBP10.55□□□□□ -0.72
NUP54-202ENST00000502850 FAM117AQ9C073 453 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 ZMAT3Q9HA38 289 aaKnown RBP10.55□□□□□ -0.72
NUP54-202ENST00000502850 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.55□□□□□ -0.72
NUP54-202ENST00000502850 COMMD9Q9P000 198 aa10.55□□□□□ -0.72
NUP54-202ENST00000502850 MYEF2Q9P2K5 600 aaKnown RBP10.55□□□□□ -0.72
NUP54-202ENST00000502850 A0A0J9YW62 118 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 A0A1B0GW55 424 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 OR14I1A6ND48 311 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 LEUTXA8MZ59 168 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 M0R135 149 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 CDX4O14627 284 aaPredicted RBP10.54□□□□□ -0.72
NUP54-202ENST00000502850 TNFSF11O14788 317 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 ARPC5O15511 151 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 MPIG6BO95866 241 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 CD8AP01732 235 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 HLA-AP01891 365 aaKnown RBP10.54□□□□□ -0.72
NUP54-202ENST00000502850 CST2P09228 141 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 DUX4L2P0CJ85 424 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 DUX4L3P0CJ86 424 aa10.54□□□□□ -0.72
NUP54-202ENST00000502850 DUX4L4P0CJ87 422 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms