RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 TNFRSF14Q92956 283 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 CHID1Q9BWS9 393 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 NMNAT1Q9HAN9 279 aaPredicted RBP13.45□□□□□ -0.26
VIM-208ENST00000497849 S100A14Q9HCY8 104 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 IL1RAPQ9NPH3 570 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 ONECUT1Q9UBC0 465 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 DNAJB11Q9UBS4 358 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 ATPIF1Q9UII2 106 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 MED31Q9Y3C7 131 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 MAB21L2Q9Y586 359 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 A0A1B0GW55 424 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 WI2-2373I1.2A0A1W2PRP0 233 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 MEIOCA2RUB1 952 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 FBXO24O75426 580 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 PTBP3O95758 552 aaKnown RBP13.44□□□□□ -0.26
VIM-208ENST00000497849 PAHP00439 452 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 DUX4L2P0CJ85 424 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 DUX4L3P0CJ86 424 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 DUX4L4P0CJ87 422 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 DUX4L5P0CJ88 424 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 DUX4L6P0CJ89 424 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 DUX4L7P0CJ90 424 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 CTLA4P16410 223 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 RHCEP18577 417 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 EEF1B2P24534 225 aaKnown RBP13.44□□□□□ -0.26
VIM-208ENST00000497849 SAA4P35542 130 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 GUCA2AQ02747 115 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 ST3GAL3Q11203 375 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 POU4F2Q12837 409 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 GK2Q14410 553 aaPredicted RBP13.44□□□□□ -0.26
VIM-208ENST00000497849 LY6EQ16553 131 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 RSPO1Q2MKA7 263 aaPredicted RBP13.44□□□□□ -0.26
VIM-208ENST00000497849 ZBTB37Q5TC79 503 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 DUX4L9Q6RFH8 374 aaPredicted RBP13.44□□□□□ -0.26
VIM-208ENST00000497849 COLCA1Q6ZS62 124 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 CYP4Z1Q86W10 505 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 WFDC9Q8NEX5 89 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 OR4F17Q8NGA8 305 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 PYDC1Q8WXC3 89 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 OR4F4Q96R69 305 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 HCAR1Q9BXC0 346 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 MAGIXQ9H6Y5 334 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 RANBP3Q9H6Z4 567 aaPredicted RBP13.44□□□□□ -0.26
VIM-208ENST00000497849 DCLRE1BQ9H816 532 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 FN3KRPQ9HA64 309 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 RNPEPL1Q9HAU8 725 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 VNN3Q9NY84 501 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 KAAG1Q9UBP8 84 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 DUX4Q9UBX2 424 aa13.44□□□□□ -0.26
VIM-208ENST00000497849 TEX13CA0A0J9YWL9 993 aa13.43□□□□□ -0.26
VIM-208ENST00000497849 H1F0P07305 194 aaKnown RBP13.43□□□□□ -0.26
VIM-208ENST00000497849 RAP2AP10114 183 aa13.43□□□□□ -0.26
VIM-208ENST00000497849 RRM2P31350 389 aa13.43□□□□□ -0.26
VIM-208ENST00000497849 SPIBQ01892 262 aa13.43□□□□□ -0.26
VIM-208ENST00000497849 COL10A1Q03692 680 aa13.43□□□□□ -0.26
VIM-208ENST00000497849 TRAM2Q15035 370 aa13.43□□□□□ -0.26
VIM-208ENST00000497849 RCN1Q15293 331 aa13.43□□□□□ -0.26
VIM-208ENST00000497849 NDUFA11Q86Y39 141 aa13.43□□□□□ -0.26
VIM-208ENST00000497849 OFCC1Q8IZS5 231 aa13.43□□□□□ -0.26
VIM-208ENST00000497849 GCSAMQ8N6F7 178 aa13.43□□□□□ -0.26
VIM-208ENST00000497849 BEND2Q8NDZ0 799 aa13.43□□□□□ -0.26
VIM-208ENST00000497849 OR51A7Q8NH64 312 aa13.43□□□□□ -0.26
VIM-208ENST00000497849 C17orf50Q8WW18 174 aa13.43□□□□□ -0.26
VIM-208ENST00000497849 DUS3LQ96G46 650 aaKnown RBP13.43□□□□□ -0.26
VIM-208ENST00000497849 TRIM36Q9NQ86 728 aa13.43□□□□□ -0.26
VIM-208ENST00000497849 TRAV27A0A087WT01 109 aa13.42□□□□□ -0.26
VIM-208ENST00000497849 TRBV4-1A0A0J9YWV2 114 aa13.42□□□□□ -0.26
VIM-208ENST00000497849 TIPRLO75663 272 aa13.42□□□□□ -0.26
VIM-208ENST00000497849 IFI30P13284 250 aa13.42□□□□□ -0.26
VIM-208ENST00000497849 MAGEA2P43356 314 aa13.42□□□□□ -0.26
VIM-208ENST00000497849 KRTAP10-11P60412 298 aa13.42□□□□□ -0.26
VIM-208ENST00000497849 LSM6P62312 80 aaKnown RBP13.42□□□□□ -0.26
VIM-208ENST00000497849 SEC23BQ15437 767 aa13.42□□□□□ -0.26
VIM-208ENST00000497849 MESTQ5EB52 335 aa13.42□□□□□ -0.26
VIM-208ENST00000497849 FGD3Q5JSP0 725 aa13.42□□□□□ -0.26
VIM-208ENST00000497849 PGBD2Q6P3X8 592 aa13.42□□□□□ -0.26
VIM-208ENST00000497849 ZNF826PQ6ZT77 177 aa13.42□□□□□ -0.26
VIM-208ENST00000497849 WIPF2Q8TF74 440 aaPredicted RBP13.42□□□□□ -0.26
VIM-208ENST00000497849 BPIFA2Q96DR5 249 aa13.42□□□□□ -0.26
VIM-208ENST00000497849 SSX3Q99909 188 aa13.42□□□□□ -0.26
VIM-208ENST00000497849 CITED2Q99967 270 aaPredicted RBP13.42□□□□□ -0.26
VIM-208ENST00000497849 POLR2J2Q9GZM3 115 aaKnown RBP13.42□□□□□ -0.26
VIM-208ENST00000497849 POLR2J3Q9H1A7 115 aaKnown RBP13.42□□□□□ -0.26
VIM-208ENST00000497849 TENM2Q9NT68 2774 aa13.42□□□□□ -0.26
VIM-208ENST00000497849 IGHV3OR15-7A0A075B7D8 119 aa13.41□□□□□ -0.26
VIM-208ENST00000497849 A0A087WUU8 490 aa13.41□□□□□ -0.26
VIM-208ENST00000497849 BAG2O95816 211 aa13.41□□□□□ -0.26
VIM-208ENST00000497849 CA6P23280 308 aa13.41□□□□□ -0.26
VIM-208ENST00000497849 IFNA8P32881 189 aa13.41□□□□□ -0.26
VIM-208ENST00000497849 HIST1H3AP68431 136 aa13.41□□□□□ -0.26
VIM-208ENST00000497849 CD69Q07108 199 aa13.41□□□□□ -0.26
VIM-208ENST00000497849 OR8G1Q15617 311 aa13.41□□□□□ -0.26
VIM-208ENST00000497849 HIST2H3PS2Q5TEC6 136 aa13.41□□□□□ -0.26
VIM-208ENST00000497849 TEX36Q5VZQ5 186 aa13.41□□□□□ -0.26
VIM-208ENST00000497849 HIST2H3AQ71DI3 136 aa13.41□□□□□ -0.26
VIM-208ENST00000497849 PAPD5Q8NDF8 572 aaKnown RBP13.41□□□□□ -0.26
VIM-208ENST00000497849 RORBQ92753 470 aa13.41□□□□□ -0.26
VIM-208ENST00000497849 DHRS1Q96LJ7 313 aa13.41□□□□□ -0.26
VIM-208ENST00000497849 DMRTB1Q96MA1 342 aa13.41□□□□□ -0.26
VIM-208ENST00000497849 COQ7Q99807 217 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms