RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 NAB1Q13506 487 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 IL18Q14116 193 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 TFDP2Q14188 446 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 WDR82Q6UXN9 313 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 TMPRSS11AQ6ZMR5 421 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 OR10W1Q8NGF6 305 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 JSRP1Q96MG2 331 aaPredicted RBP1.69□□□□□ -2.14
VPS50-219ENST00000495039 OR4K3Q96R72 315 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 KCNS3Q9BQ31 491 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 RHOXF2Q9BQY4 288 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 NUDT9Q9BW91 350 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 ELOVL6Q9H5J4 265 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 CSNK1G1Q9HCP0 422 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 DHCR7Q9UBM7 475 aaKnown RBP1.69□□□□□ -2.14
VPS50-219ENST00000495039 UBIAD1Q9Y5Z9 338 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 NSD2O96028 1365 aa1.69□□□□□ -2.14
VPS50-219ENST00000495039 WRBO00258 174 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 BCKDKO14874 412 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 SCO1O75880 301 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 TGM6O95932 706 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 KRT16P08779 473 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 BMI1P35226 326 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 MPV17P39210 176 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 MYCNOSP40205 109 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 NBL1P41271 181 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 IL15RAQ13261 267 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 ILKQ13418 452 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 KLHL12Q53G59 568 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 BEX5Q5H9J7 111 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 RWDD4Q6NW29 188 aaKnown RBP1.68□□□□□ -2.14
VPS50-219ENST00000495039 PRSS54Q6PEW0 395 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 BRD3OSQ6XYD6 125 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 Q6ZSR6 202 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 UNC93AQ86WB7 457 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 OR5AR1Q8NGP9 310 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 OR52E5Q8NH55 327 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 OR1L1Q8NH94 360 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 KLF14Q8TD94 323 aaPredicted RBP1.68□□□□□ -2.14
VPS50-219ENST00000495039 DCAKDQ8WVC6 231 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 CPNE4Q96A23 557 aaPredicted RBP1.68□□□□□ -2.14
VPS50-219ENST00000495039 C18orf15Q96N68 181 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 GPR82Q96P67 336 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 MARVELD1Q9BSK0 173 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 C1orf50Q9BV19 199 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 EXO5Q9H790 373 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 ZNF442Q9H7R0 627 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 FARSAQ9Y285 508 aaKnown RBP1.68□□□□□ -2.14
VPS50-219ENST00000495039 COMMD3-BMI1R4GMX3 469 aa1.68□□□□□ -2.14
VPS50-219ENST00000495039 IGKV2-24A0A0C4DH68 120 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 XRCC2O43543 280 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 SLC16A7O60669 478 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 DNAJB6O75190 326 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 LHBP01229 141 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 UBCP0CG48 685 aaKnown RBP1.67□□□□□ -2.14
VPS50-219ENST00000495039 GABRG2P18507 467 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 NTF3P20783 257 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 PRKACBP22694 351 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 APLNRP35414 380 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 TGFBR1P36897 503 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 RPS15AP62244 130 aaKnown RBP1.67□□□□□ -2.14
VPS50-219ENST00000495039 RPS11P62280 158 aaKnown RBP eCLIP1.67□□□□□ -2.14
VPS50-219ENST00000495039 PRKCDQ05655 676 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 KDSRQ06136 332 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 ITIH4Q14624 930 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 MAD2L1BPQ15013 274 aaPredicted RBP1.67□□□□□ -2.14
VPS50-219ENST00000495039 MED27Q6P2C8 311 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 MICU2Q8IYU8 434 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 ZNF680Q8NEM1 530 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 OR5M1Q8NGP8 315 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 OR51F2Q8NH61 342 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 CDS1Q92903 461 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 KCNS1Q96KK3 526 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 C9orf72Q96LT7 481 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 ZFP3Q96NJ6 502 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 OPALINQ96PE5 141 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 TEAD3Q99594 435 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 EMC6Q9BV81 110 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 LHX5Q9H2C1 402 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 CLSTN2Q9H4D0 955 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 DHX35Q9H5Z1 703 aaKnown RBP1.67□□□□□ -2.14
VPS50-219ENST00000495039 AUNIPQ9H7T9 357 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 VPS37BQ9H9H4 285 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 MCUBQ9NWR8 336 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 DCAF16Q9NXF7 216 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 MYEF2Q9P2K5 600 aaKnown RBP1.67□□□□□ -2.14
VPS50-219ENST00000495039 LRRC42Q9Y546 428 aa1.67□□□□□ -2.14
VPS50-219ENST00000495039 MROH7Q68CQ1 1323 aa1.66□□□□□ -2.14
VPS50-219ENST00000495039 A0A1W2PRD5 423 aa1.66□□□□□ -2.14
VPS50-219ENST00000495039 C16orf90A8MZG2 172 aa1.66□□□□□ -2.14
VPS50-219ENST00000495039 CENPBD1B2RD01 187 aa1.66□□□□□ -2.14
VPS50-219ENST00000495039 PRAMEF26H0Y7S4 382 aa1.66□□□□□ -2.14
VPS50-219ENST00000495039 M0R1X1 148 aa1.66□□□□□ -2.14
VPS50-219ENST00000495039 MFNGO00587 321 aa1.66□□□□□ -2.14
VPS50-219ENST00000495039 CASQ2O14958 399 aaPredicted RBP1.66□□□□□ -2.14
VPS50-219ENST00000495039 ERI3O43414 337 aaKnown RBP1.66□□□□□ -2.14
VPS50-219ENST00000495039 SLC19A2O60779 497 aa1.66□□□□□ -2.14
VPS50-219ENST00000495039 TDP2O95551 362 aa1.66□□□□□ -2.14
VPS50-219ENST00000495039 CD34P28906 385 aa1.66□□□□□ -2.14
VPS50-219ENST00000495039 IDH2P48735 452 aaKnown RBP1.66□□□□□ -2.14
VPS50-219ENST00000495039 CMC4P56277 68 aaPredicted RBP1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms