RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 C9orf64Q5T6V5 341 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ARMC12Q5T9G4 340 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 LYPLAL1Q5VWZ2 237 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 TTC23Q5W5X9 447 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 LEMD1Q68G75 181 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF470Q6ECI4 717 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 OR8G2PQ6IF36 304 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 PNCKQ6P2M8 343 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ULK3Q6PHR2 472 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM64Q6YI46 380 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 LINC00696Q6ZRV3 163 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 LINC00299Q6ZSB3 139 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 FAM183BPQ6ZVS7 135 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 SLC16A14Q7RTX9 510 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 P4HA3Q7Z4N8 544 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 NAA40Q86UY6 237 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 VASH2Q86V25 355 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 AMZ2Q86W34 360 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 CACUL1Q86Y37 369 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM126BQ8IUX1 230 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 MISPQ8IVT2 679 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 NRMQ8IXM6 262 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 KATNAL2Q8IYT4 538 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 DEFB119Q8N690 84 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 PACRGLQ8N7B6 248 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 GDPD1Q8N9F7 314 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 LINC00301Q8NCQ3 95 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 BHLHE23Q8NDY6 225 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 TSTD1Q8NFU3 115 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 OR8D4Q8NGM9 314 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 MCFD2Q8NI22 146 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 TYMSOSQ8TAI1 123 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 FIBINQ8TAL6 211 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 BLOC1S5Q8TDH9 187 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 PHF10Q8WUB8 498 aaKnown RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 CDS1Q92903 461 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 SLC38A4Q969I6 547 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 C11orf52Q96A22 123 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 SLC35C1Q96A29 364 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 BTN2A3PQ96KV6 586 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF382Q96SR6 550 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 NPAS2Q99743 824 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 P2RY13Q9BPV8 354 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 EBF4Q9BQW3 602 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 VPS25Q9BRG1 176 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 C7orf50Q9BRJ6 194 aaKnown RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM175Q9BSA9 504 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF2Q9BSG1 426 aaPredicted RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 DPH7Q9BTV6 452 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 THUMPD3Q9BV44 507 aaKnown RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 FUNDC2Q9BWH2 189 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 HINT2Q9BX68 163 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 CACNG6Q9BXT2 260 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 FTHL17Q9BXU8 183 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 PLA2G12AQ9BZM1 189 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ROPN1BQ9BZX4 212 aaPredicted RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 NKX6-2Q9C056 277 aaPredicted RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 RAB33BQ9H082 229 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM117Q9H0C3 514 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 GANQ9H2C0 597 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 DSN1Q9H410 356 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 NXF3Q9H4D5 531 aaKnown RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 EXO5Q9H790 373 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 NT5DC2Q9H857 520 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ROPN1Q9HAT0 212 aaPredicted RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ELL3Q9HB65 397 aaPredicted RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 TREX1Q9NSU2 369 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM161AQ9NX61 479 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 SLCO1C1Q9NYB5 712 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 PDP1Q9P0J1 537 aaPredicted RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF581Q9P0T4 197 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF319Q9P2F9 582 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ARMCX3Q9UH62 379 aaPredicted RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 KIF25Q9UIL4 384 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 NAGKQ9UJ70 344 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 RIMS3Q9UJD0 308 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 KLHL21Q9UJP4 597 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 SCP2D1Q9UJQ7 156 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ANAPC7Q9UJX3 599 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 GNG8Q9UK08 70 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 POMPQ9Y244 141 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 SLC6A5Q9Y345 797 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 RHBDD3Q9Y3P4 386 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 DOCK8Q8NF50 2099 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 APCP25054 2843 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 MGAQ8IWI9 3026 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 SPAG17Q6Q759 2223 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TLN2Q9Y4G6 2542 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 A0A096LPI6 279 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 A0A0G2JN53 185 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TEX48A0A1B0GUV7 120 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 A0A1W2PNV4 684 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 A0A1W2PPE3 182 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM72A0PK05 275 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 FABP12A6NFH5 140 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TUBAL3A6NHL2 446 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 A6NIZ1 184 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 VSTM2BA6NLU5 285 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TSTD3H0UI37 97 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 KLRC4-KLRK1H3BQV0 150 aa1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms