RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 IGHV1-46P01743 117 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 GRPP07492 148 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 SBK2P0C263 348 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 OR2T7P0C7T2 308 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 LYNX1P0DP58 116 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 MYL12AP19105 171 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 KITLGP21583 273 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 NR4A2P43354 598 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 ACTA2P62736 377 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 ACTG2P63267 376 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 HIST1H3AP68431 136 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 DBPQ10586 325 aaPredicted RBP6.85□□□□□ -1.31
USP40-216ENST00000485943 SCGB2A2Q13296 93 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 GK2Q14410 553 aaPredicted RBP6.85□□□□□ -1.31
USP40-216ENST00000485943 GLYATL3Q5SZD4 288 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 AVPI1Q5T686 147 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 HIST2H3PS2Q5TEC6 136 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 DEGS2Q6QHC5 323 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 HIST2H3AQ71DI3 136 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 RHOUQ7L0Q8 258 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 LURAP1LQ8IV03 231 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 ZNF679Q8IYX0 411 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 SPICQ8N5J4 248 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 OR56B2PQ8NGI1 322 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 OR2T27Q8NH04 317 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 RNF133Q8WVZ7 376 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 ITLN1Q8WWA0 313 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 PIGCQ92535 297 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 FAM71F1Q96KD3 344 aaPredicted RBP6.85□□□□□ -1.31
USP40-216ENST00000485943 OR2V2Q96R30 315 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 MICU1Q9BPX6 476 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 RTL8AQ9BWD3 113 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 MOB1AQ9H8S9 216 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 ZNF275Q9NSD4 429 aaPredicted RBP6.85□□□□□ -1.31
USP40-216ENST00000485943 RPL36Q9Y3U8 105 aaKnown RBP6.85□□□□□ -1.31
USP40-216ENST00000485943 LRP12Q9Y561 859 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 FBN2P35556 2912 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 IGHV3-64DA0A0J9YX35 117 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 ANKRD34BA5PLL1 514 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 ZSCAN5BA6NJL1 495 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 GMDSO60547 372 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 TGFAP01135 160 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 HPXP02790 462 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 ZNF12P17014 697 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 CA6P23280 308 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 SRP14P37108 136 aaKnown RBP6.84□□□□□ -1.31
USP40-216ENST00000485943 OPRL1P41146 370 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 CRYBB2P43320 205 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 HCCSP53701 268 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 MRPS11P82912 194 aaKnown RBP6.84□□□□□ -1.31
USP40-216ENST00000485943 EGR3Q06889 387 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 OR8B8Q15620 311 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 ODF4Q2M2E3 257 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 SNAI3Q3KNW1 292 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 KLHL22Q53GT1 634 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 ZNF362Q5T0B9 420 aaPredicted RBP6.84□□□□□ -1.31
USP40-216ENST00000485943 LINC01590Q5TEZ4 76 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 LPCAT4Q643R3 524 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 BCDIN3DQ7Z5W3 292 aaKnown RBP6.84□□□□□ -1.31
USP40-216ENST00000485943 NAA40Q86UY6 237 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 MOGAT3Q86VF5 341 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 GLCCI1Q86VQ1 547 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 KLBQ86Z14 1044 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 C8orf59Q8N0T1 100 aaPredicted RBP6.84□□□□□ -1.31
USP40-216ENST00000485943 MUC20Q8N307 709 aaPredicted RBP6.84□□□□□ -1.31
USP40-216ENST00000485943 TEX29Q8N6K0 151 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 PACRGLQ8N7B6 248 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 SEMA6DQ8NFY4 1073 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 RNF141Q8WVD5 230 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 COX4I2Q96KJ9 171 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 HRASLS5Q96KN8 279 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 COMMD4Q9H0A8 199 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 SHARPINQ9H0F6 387 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 UFSP2Q9NUQ7 469 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 MRPL15Q9P015 296 aaKnown RBP6.84□□□□□ -1.31
USP40-216ENST00000485943 TMEFF2Q9UIK5 374 aaPredicted RBP6.84□□□□□ -1.31
USP40-216ENST00000485943 SNX5Q9Y5X3 404 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 DYSFO75923 2080 aa6.84□□□□□ -1.31
USP40-216ENST00000485943 CHD3Q12873 2000 aaKnown RBP6.83□□□□□ -1.32
USP40-216ENST00000485943 LRP5LA4QPB2 252 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 METTL15A6NJ78 407 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 ACOD1A6NK06 481 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 A8MV72 311 aaPredicted RBP6.83□□□□□ -1.32
USP40-216ENST00000485943 F5H5P2 479 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 J3QLW9 94 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 ENTPD6O75354 484 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 CYB5AP00167 134 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 IFNA2P01563 188 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 HLA-DPB1P04440 258 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 RPSAP08865 295 aaKnown RBP6.83□□□□□ -1.32
USP40-216ENST00000485943 HTR1AP08908 422 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 ZNF19P17023 458 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 ZNF20P17024 532 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 ALOX5APP20292 161 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 SLC2A5P22732 501 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 COL8A2P25067 703 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 PEX2P28328 305 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 EPHA2P29317 976 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 POLR2IP36954 125 aaKnown RBP6.83□□□□□ -1.32
USP40-216ENST00000485943 MMP15P51511 669 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms