RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 C19orf47Q8N9M1 422 aaKnown RBP12.13□□□□□ -0.47
USP42-206ENST00000479544 OR13H1Q8NG92 308 aa12.13□□□□□ -0.47
USP42-206ENST00000479544 INTS12Q96CB8 462 aaKnown RBP12.13□□□□□ -0.47
USP42-206ENST00000479544 ZNF681Q96N22 645 aa12.13□□□□□ -0.47
USP42-206ENST00000479544 HDAC8Q9BY41 377 aa12.13□□□□□ -0.47
USP42-206ENST00000479544 PATZ1Q9HBE1 687 aaKnown RBP12.13□□□□□ -0.47
USP42-206ENST00000479544 SUSD2Q9UGT4 822 aa12.13□□□□□ -0.47
USP42-206ENST00000479544 EGR3Q06889 387 aa12.13□□□□□ -0.47
USP42-206ENST00000479544 MPPED2Q15777 294 aa12.13□□□□□ -0.47
USP42-206ENST00000479544 CCDC71LQ8N9Z2 235 aa12.13□□□□□ -0.47
USP42-206ENST00000479544 KLHL13Q9P2N7 655 aa12.13□□□□□ -0.47
USP42-206ENST00000479544 FLVCR1Q9Y5Y0 555 aa12.13□□□□□ -0.47
USP42-206ENST00000479544 CNOT1A5YKK6 2376 aaKnown RBP12.13□□□□□ -0.47
USP42-206ENST00000479544 A8MVM7 634 aa12.13□□□□□ -0.47
USP42-206ENST00000479544 MT-ND4LP03901 98 aa12.13□□□□□ -0.47
USP42-206ENST00000479544 MOGAT2Q3SYC2 334 aa12.13□□□□□ -0.47
USP42-206ENST00000479544 PRSS35Q8N3Z0 413 aa12.13□□□□□ -0.47
USP42-206ENST00000479544 ZDHHC12Q96GR4 267 aa12.13□□□□□ -0.47
USP42-206ENST00000479544 HINT2Q9BX68 163 aa12.13□□□□□ -0.47
USP42-206ENST00000479544 LYRM4Q9HD34 91 aa12.13□□□□□ -0.47
USP42-206ENST00000479544 NPDC1Q9NQX5 325 aaPredicted RBP12.13□□□□□ -0.47
USP42-206ENST00000479544 CHRNA9Q9UGM1 479 aa12.13□□□□□ -0.47
USP42-206ENST00000479544 PIAS3Q9Y6X2 628 aa12.13□□□□□ -0.47
USP42-206ENST00000479544 PARP14Q460N5 1801 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 IGHV3-64DA0A0J9YX35 117 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 MCEMP1Q8IX19 187 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 RBMXL1Q96E39 390 aaKnown RBP12.12□□□□□ -0.47
USP42-206ENST00000479544 PAPOLGQ9BWT3 736 aaKnown RBP12.12□□□□□ -0.47
USP42-206ENST00000479544 GDE1Q9NZC3 331 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 THAP10Q9P2Z0 257 aaPredicted RBP12.12□□□□□ -0.47
USP42-206ENST00000479544 TNFSF18Q9UNG2 199 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 ADAM10O14672 748 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 IGHG1P01857 330 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 HPNP05981 417 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 PIGPP57054 158 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 OR51H1Q8NH63 302 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 FAM122AQ96E09 287 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 TSPAN32Q96QS1 320 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 HAO2Q9NYQ3 351 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 VSIG4Q9Y279 399 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 ZNF587BE7ETH6 402 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 OR5H8P0DN80 308 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 POLR2HP52434 150 aaKnown RBP12.12□□□□□ -0.47
USP42-206ENST00000479544 CLDN17P56750 224 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 TMEM33P57088 247 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 GABREP78334 506 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 TOMM34Q15785 309 aaPredicted RBP12.12□□□□□ -0.47
USP42-206ENST00000479544 CMTM1Q8IZ96 169 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 ZNRF4Q8WWF5 429 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 OR2A5Q96R48 311 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 SPIN2AQ99865 258 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 SPIN2BQ9BPZ2 258 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 SOSTQ9BQB4 213 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 GPR173Q9NS66 373 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 KCNE5Q9UJ90 142 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 ZDBF2Q9HCK1 2354 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 CUL9Q8IWT3 2517 aa12.12□□□□□ -0.47
USP42-206ENST00000479544 CDRT15L2A8MXV6 281 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 DNASE2O00115 360 aaPredicted RBP12.11□□□□□ -0.47
USP42-206ENST00000479544 PSG6Q00889 435 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 SKP2Q13309 424 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 CD226Q15762 336 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 OPN5Q6U736 354 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 OR14L1PQ8NHC6 308 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 APOBEC4Q8WW27 367 aaKnown RBP12.11□□□□□ -0.47
USP42-206ENST00000479544 GDF2Q9UK05 429 aaPredicted RBP12.11□□□□□ -0.47
USP42-206ENST00000479544 DKKL1Q9UK85 242 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 DTX4Q9Y2E6 619 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 TDRD6O60522 2096 aaKnown RBP12.11□□□□□ -0.47
USP42-206ENST00000479544 IFNA1P01562 189 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 FASLGP48023 281 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 CSNK1A1P48729 337 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 LPAR3Q9UBY5 353 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 TBX21Q9UL17 535 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 MPDZO75970 2070 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 GREB1Q4ZG55 1949 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 A8MXK9 166 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 HMGB3O15347 200 aaKnown RBP12.11□□□□□ -0.47
USP42-206ENST00000479544 NKX2-2O95096 273 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 DUS4LO95620 317 aaKnown RBP12.11□□□□□ -0.47
USP42-206ENST00000479544 CD1CP29017 333 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 IL34Q6ZMJ4 242 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 RTN4IP1Q8WWV3 396 aaPredicted RBP12.11□□□□□ -0.47
USP42-206ENST00000479544 PRRX2Q99811 253 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 NRIP2Q9BQI9 281 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 R4GMQ9 66 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 SOCS1O15524 211 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 SSSCA1O60232 199 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 ONECUT2O95948 504 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 NGFRP08138 427 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 IL9P15248 144 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 ADPRHP54922 357 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 MALLQ13021 153 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 PCK2Q16822 640 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 PRICKLE4Q2TBC4 344 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 LILRA6Q6PI73 481 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 CLEC18BQ6UXF7 455 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 RPUSD4Q96CM3 377 aaKnown RBP12.11□□□□□ -0.47
USP42-206ENST00000479544 MALSU1Q96EH3 234 aa12.11□□□□□ -0.47
USP42-206ENST00000479544 PIK3IP1Q96FE7 263 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms