RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SEC14L6B5MCN3 397 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 TNFRSF11BO00300 401 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 SOCS1O15524 211 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 ARR3P36575 388 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 SPAM1P38567 509 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 ZNF133P52736 654 aaPredicted RBP3.32□□□□□ -1.88
UPF3B-203ENST00000478840 MLF1P58340 268 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 ESRRGP62508 458 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 RPL23P62829 140 aaKnown RBP3.32□□□□□ -1.88
UPF3B-203ENST00000478840 RAP1AP62834 184 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 DMTNQ08495 405 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 MADCAM1Q13477 382 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 USF2Q15853 346 aaPredicted RBP3.32□□□□□ -1.88
UPF3B-203ENST00000478840 TAL2Q16559 108 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 UBE2SQ16763 222 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 ZNF658BQ4V348 819 aaPredicted RBP3.32□□□□□ -1.88
UPF3B-203ENST00000478840 STEAP4Q687X5 459 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 RTL4Q6ZR62 310 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 SLC30A8Q8IWU4 369 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 ZNF786Q8N393 782 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 SMARCD1Q96GM5 515 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 CPB2Q96IY4 423 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 ATP6V1G3Q96LB4 118 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 HSD17B10Q99714 261 aaKnown RBP3.32□□□□□ -1.88
UPF3B-203ENST00000478840 GABRG3Q99928 467 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 KCNS3Q9BQ31 491 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 SULT4A1Q9BR01 284 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 HMG20AQ9NP66 347 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 DDX19AQ9NUU7 478 aaKnown RBP3.32□□□□□ -1.88
UPF3B-203ENST00000478840 VAPAQ9P0L0 249 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 CFL2Q9Y281 166 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 ACOT9Q9Y305 439 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 HYOU1Q9Y4L1 999 aa3.32□□□□□ -1.88
UPF3B-203ENST00000478840 GPATCH8Q9UKJ3 1502 aaKnown RBP3.31□□□□□ -1.88
UPF3B-203ENST00000478840 IGHV1OR15-9A0A0B4J2B8 117 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 GOLGA8JA6NMD2 632 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 POLR3GO15318 223 aaPredicted RBP3.31□□□□□ -1.88
UPF3B-203ENST00000478840 B4GALT5O43286 388 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 REM1O75628 298 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 SC5DO75845 299 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 SLC22A5O76082 557 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 SMC2O95347 1197 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 GOLGA8HP0CJ92 632 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 GGT2P36268 569 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 POLR2IP36954 125 aaKnown RBP3.31□□□□□ -1.88
UPF3B-203ENST00000478840 DNASE1L1P49184 302 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 TAS2R46P59540 309 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 SLC35A1P78382 337 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 CRADDP78560 199 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 LOXL1Q08397 574 aaPredicted RBP3.31□□□□□ -1.88
UPF3B-203ENST00000478840 GPR176Q14439 515 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 MAD2L1BPQ15013 274 aaPredicted RBP3.31□□□□□ -1.88
UPF3B-203ENST00000478840 TNXAQ16473 311 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 TFDP3Q5H9I0 405 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 FBXW9Q5XUX1 488 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 NTM-AS1Q6ZSK4 140 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 CA13Q8N1Q1 262 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 OR6K2Q8NGY2 324 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 ZFAND1Q8TCF1 268 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 CDKL2Q92772 493 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 NAPGQ99747 312 aaPredicted RBP3.31□□□□□ -1.88
UPF3B-203ENST00000478840 UTP23Q9BRU9 249 aaKnown RBP3.31□□□□□ -1.88
UPF3B-203ENST00000478840 EMC6Q9BV81 110 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 ARV1Q9H2C2 271 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 OR52A5Q9H2C5 316 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 C12orf10Q9HB07 376 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 ZDHHC4Q9NPG8 344 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 RMND1Q9NWS8 449 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 VAX2Q9UIW0 290 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 TBX21Q9UL17 535 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 TSSC4Q9Y5U2 329 aaPredicted RBP3.31□□□□□ -1.88
UPF3B-203ENST00000478840 NOTCH3Q9UM47 2321 aa3.31□□□□□ -1.88
UPF3B-203ENST00000478840 MAP3K19Q56UN5 1328 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 KRBOX1C9JBD0 128 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 BPY2O14599 106 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 CST4P01036 141 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 OR5AL1P0C617 328 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 ZNF823P16415 610 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 CXCR1P25024 350 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 TALDO1P37837 337 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 PPOXP50336 477 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 MECOMQ03112 1051 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 SIGLEC14Q08ET2 396 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 DYNC1I2Q13409 638 aaKnown RBP3.3□□□□□ -1.88
UPF3B-203ENST00000478840 FAHD1Q6P587 224 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 LINC01551Q86U37 167 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 OR6N1Q8NGY5 312 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 COQ8AQ8NI60 647 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 ACBD6Q9BR61 282 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 SLC17A9Q9BYT1 436 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 TREM1Q9NP99 234 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 CHMP5Q9NZZ3 219 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 GMEB1Q9Y692 573 aa3.3□□□□□ -1.88
UPF3B-203ENST00000478840 IGKV1-27A0A075B6S5 117 aa3.29□□□□□ -1.88
UPF3B-203ENST00000478840 TRAV8-7A0A075B6U6 113 aa3.29□□□□□ -1.88
UPF3B-203ENST00000478840 TVP23AA6NH52 213 aa3.29□□□□□ -1.88
UPF3B-203ENST00000478840 IQCF5A8MTL0 148 aa3.29□□□□□ -1.88
UPF3B-203ENST00000478840 TMX2-CTNND1H3BSU7 103 aa3.29□□□□□ -1.88
UPF3B-203ENST00000478840 K7EN84 100 aa3.29□□□□□ -1.88
UPF3B-203ENST00000478840 PSPHP1O15172 72 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms