RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 PCMT1P22061 227 aa15.03■□□□□ -0
COL7A1-205ENST00000465238 CFL1P23528 166 aaKnown RBP15.03■□□□□ -0
COL7A1-205ENST00000465238 RAB40BQ12829 278 aa15.03■□□□□ -0
COL7A1-205ENST00000465238 SMN1Q16637 294 aaKnown RBP15.03■□□□□ -0
COL7A1-205ENST00000465238 TSTQ16762 297 aaKnown RBP15.03■□□□□ -0
COL7A1-205ENST00000465238 GFOD2Q3B7J2 385 aa15.03■□□□□ -0
COL7A1-205ENST00000465238 SSX6Q7RTT6 188 aa15.03■□□□□ -0
COL7A1-205ENST00000465238 ACBD7Q8N6N7 88 aa15.03■□□□□ -0
COL7A1-205ENST00000465238 OR8G5Q8NG78 346 aa15.03■□□□□ -0
COL7A1-205ENST00000465238 REEP6Q96HR9 211 aa15.03■□□□□ -0
COL7A1-205ENST00000465238 MYCBPQ99417 103 aaPredicted RBP15.03■□□□□ -0
COL7A1-205ENST00000465238 RGCCQ9H4X1 137 aa15.03■□□□□ -0
COL7A1-205ENST00000465238 DECR2Q9NUI1 292 aa15.03■□□□□ -0
COL7A1-205ENST00000465238 NKIRAS2Q9NYR9 191 aa15.03■□□□□ -0
COL7A1-205ENST00000465238 MRM2Q9UI43 246 aaKnown RBP15.03■□□□□ -0
COL7A1-205ENST00000465238 ZSCAN5BA6NJL1 495 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 IQCF6A8MYZ5 107 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 J3QRE1 110 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 SULT1C4O75897 302 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 IGHV1-46P01743 117 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 ANOS1P23352 680 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 TNFSF4P23510 183 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 MAGEB1P43366 347 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 MMP16P51512 607 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 PRSS12P56730 875 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 CCL8P80075 99 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 ZNF85Q03923 595 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 CDK5R2Q13319 367 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 FAM220AQ7Z4H9 259 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 THAP5Q7Z6K1 395 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 BHLHE23Q8NDY6 225 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 OR13G1Q8NGZ3 307 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 RDH5Q92781 318 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 SPSB4Q96A44 273 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 MRPL48Q96GC5 212 aaKnown RBP15.02■□□□□ -0
COL7A1-205ENST00000465238 EGLN1Q9GZT9 426 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 TMEM100Q9NV29 134 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 MRPS18AQ9NVS2 196 aaKnown RBP15.02■□□□□ -0
COL7A1-205ENST00000465238 FAM206AQ9NX38 181 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 ZNF319Q9P2F9 582 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 GTF2A1LQ9UNN4 478 aa15.02■□□□□ -0
COL7A1-205ENST00000465238 IRGMA1A4Y4 181 aa15.01□□□□□ -0.01
COL7A1-205ENST00000465238 CD300LBA8K4G0 201 aa15.01□□□□□ -0.01
COL7A1-205ENST00000465238 LOC110117498-PIK3R3F6TDL0 507 aa15.01□□□□□ -0.01
COL7A1-205ENST00000465238 RPP14O95059 124 aaKnown RBP15.01□□□□□ -0.01
COL7A1-205ENST00000465238 HPXP02790 462 aa15.01□□□□□ -0.01
COL7A1-205ENST00000465238 ADH4P08319 380 aa15.01□□□□□ -0.01
COL7A1-205ENST00000465238 ACHEP22303 614 aa15.01□□□□□ -0.01
COL7A1-205ENST00000465238 SRP14P37108 136 aaKnown RBP15.01□□□□□ -0.01
COL7A1-205ENST00000465238 GPR6P46095 362 aaPredicted RBP15.01□□□□□ -0.01
COL7A1-205ENST00000465238 HSPA13P48723 471 aa15.01□□□□□ -0.01
COL7A1-205ENST00000465238 DVL1P1P54792 670 aaPredicted RBP15.01□□□□□ -0.01
COL7A1-205ENST00000465238 MRPS11P82912 194 aaKnown RBP15.01□□□□□ -0.01
COL7A1-205ENST00000465238 SRSF2Q01130 221 aaKnown RBP15.01□□□□□ -0.01
COL7A1-205ENST00000465238 FAM209AQ5JX71 171 aa15.01□□□□□ -0.01
COL7A1-205ENST00000465238 IZUMO2Q6UXV1 221 aa15.01□□□□□ -0.01
COL7A1-205ENST00000465238 KCTD20Q7Z5Y7 419 aa15.01□□□□□ -0.01
COL7A1-205ENST00000465238 OR2Z1Q8NG97 314 aa15.01□□□□□ -0.01
COL7A1-205ENST00000465238 OR8B12Q8NGG6 310 aa15.01□□□□□ -0.01
COL7A1-205ENST00000465238 ELMOD3Q96FG2 381 aa15.01□□□□□ -0.01
COL7A1-205ENST00000465238 PBOV1Q9GZY1 135 aa15.01□□□□□ -0.01
COL7A1-205ENST00000465238 INPP5EQ9NRR6 644 aa15.01□□□□□ -0.01
COL7A1-205ENST00000465238 ZNF391Q9UJN7 358 aa15.01□□□□□ -0.01
COL7A1-205ENST00000465238 GNG8Q9UK08 70 aa15.01□□□□□ -0.01
COL7A1-205ENST00000465238 MYRFQ9Y2G1 1151 aa15.01□□□□□ -0.01
COL7A1-205ENST00000465238 R4GMQ9 66 aa15.01□□□□□ -0.01
COL7A1-205ENST00000465238 B4DSR2 109 aa15□□□□□ -0.01
COL7A1-205ENST00000465238 DDOSTP39656 456 aa15□□□□□ -0.01
COL7A1-205ENST00000465238 VHLP40337 213 aa15□□□□□ -0.01
COL7A1-205ENST00000465238 TMEM33P57088 247 aa15□□□□□ -0.01
COL7A1-205ENST00000465238 TNFAIP6P98066 277 aaPredicted RBP15□□□□□ -0.01
COL7A1-205ENST00000465238 TP53I3Q53FA7 332 aa15□□□□□ -0.01
COL7A1-205ENST00000465238 ZNF684Q5T5D7 378 aa15□□□□□ -0.01
COL7A1-205ENST00000465238 Q6ZR03 302 aa15□□□□□ -0.01
COL7A1-205ENST00000465238 LHFPL3Q86UP9 236 aa15□□□□□ -0.01
COL7A1-205ENST00000465238 OR52I1Q8NGK6 324 aa15□□□□□ -0.01
COL7A1-205ENST00000465238 SIGLEC11Q96RL6 698 aa15□□□□□ -0.01
COL7A1-205ENST00000465238 SLC30A2Q9BRI3 323 aa15□□□□□ -0.01
COL7A1-205ENST00000465238 MOB1AQ9H8S9 216 aa15□□□□□ -0.01
COL7A1-205ENST00000465238 SAP30LQ9HAJ7 183 aa15□□□□□ -0.01
COL7A1-205ENST00000465238 NUFIP1Q9UHK0 495 aaKnown RBP15□□□□□ -0.01
COL7A1-205ENST00000465238 SNX5Q9Y5X3 404 aa15□□□□□ -0.01
COL7A1-205ENST00000465238 TCF21O43680 179 aa14.99□□□□□ -0.01
COL7A1-205ENST00000465238 NCR1O76036 304 aa14.99□□□□□ -0.01
COL7A1-205ENST00000465238 PNPP00491 289 aa14.99□□□□□ -0.01
COL7A1-205ENST00000465238 COL8A2P25067 703 aa14.99□□□□□ -0.01
COL7A1-205ENST00000465238 GSK3AP49840 483 aa14.99□□□□□ -0.01
COL7A1-205ENST00000465238 ACTA2P62736 377 aa14.99□□□□□ -0.01
COL7A1-205ENST00000465238 ACTG2P63267 376 aa14.99□□□□□ -0.01
COL7A1-205ENST00000465238 FAM3AP98173 230 aa14.99□□□□□ -0.01
COL7A1-205ENST00000465238 MFGE8Q08431 387 aaPredicted RBP14.99□□□□□ -0.01
COL7A1-205ENST00000465238 CDONQ4KMG0 1287 aa14.99□□□□□ -0.01
COL7A1-205ENST00000465238 BCL2L15Q5TBC7 163 aa14.99□□□□□ -0.01
COL7A1-205ENST00000465238 GLCCI1Q86VQ1 547 aa14.99□□□□□ -0.01
COL7A1-205ENST00000465238 COMMD2Q86X83 199 aa14.99□□□□□ -0.01
COL7A1-205ENST00000465238 OR56B2PQ8NGI1 322 aa14.99□□□□□ -0.01
COL7A1-205ENST00000465238 SLC22A4Q9H015 551 aa14.99□□□□□ -0.01
COL7A1-205ENST00000465238 FGF20Q9NP95 211 aaPredicted RBP14.99□□□□□ -0.01
COL7A1-205ENST00000465238 OR52A1Q9UKL2 312 aa14.99□□□□□ -0.01
COL7A1-205ENST00000465238 A0A0U1RQV5 110 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms