RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 FAHD2BQ6P2I3 314 aaPredicted RBP13.25□□□□□ -0.29
LDLR-202ENST00000455727 C6orf15Q6UXA7 325 aaPredicted RBP13.25□□□□□ -0.29
LDLR-202ENST00000455727 NAXDQ8IW45 347 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 DEFB123Q8N688 67 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 TMEM104Q8NE00 496 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 FAHD2AQ96GK7 314 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 LYZL4Q96KX0 146 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 SPACA5Q96QH8 159 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 TMEM59Q9BXS4 323 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 SRXN1Q9BYN0 137 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 ULBP2Q9BZM5 246 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 VSIG4Q9Y279 399 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 MRPS18CQ9Y3D5 142 aaKnown RBP13.25□□□□□ -0.29
LDLR-202ENST00000455727 VPS13AQ96RL7 3174 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 A0A0A6YYD4 124 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 SMAD9O15198 467 aaKnown RBP13.24□□□□□ -0.29
LDLR-202ENST00000455727 DHRS3O75911 302 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 HLA-GP17693 338 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 HOXD11P31277 338 aaPredicted RBP13.24□□□□□ -0.29
LDLR-202ENST00000455727 ARPC4P59998 168 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 Q0VFX4 171 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 NKPD1Q17RQ9 610 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 NHLRC3Q5JS37 347 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 LY6G6FQ5SQ64 297 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 B3GNTL1Q67FW5 361 aaPredicted RBP13.24□□□□□ -0.29
LDLR-202ENST00000455727 NAA40Q86UY6 237 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 OR56B1Q8NGI3 324 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 PP6455Q8WZ26 134 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 MRGPRFQ96AM1 343 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 RAB3CQ96E17 227 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 NICN1Q9BSH3 213 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 URM1Q9BTM9 101 aaKnown RBP13.24□□□□□ -0.29
LDLR-202ENST00000455727 KCNN3Q9UGI6 736 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 OR5H15A6NDH6 313 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 MASP2O00187 686 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 ARPC5O15511 151 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 MPIG6BO95866 241 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 CD8AP01732 235 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 HIST1H1DP16402 221 aaKnown RBP13.24□□□□□ -0.29
LDLR-202ENST00000455727 TCN2P20062 427 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 OTX2P32243 289 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 GK2Q14410 553 aaPredicted RBP13.24□□□□□ -0.29
LDLR-202ENST00000455727 HLXQ14774 488 aaPredicted RBP13.24□□□□□ -0.29
LDLR-202ENST00000455727 OR52W1Q6IF63 320 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 TMUB2Q71RG4 321 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 FAM89BQ8N5H3 189 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 PNLDC1Q8NA58 520 aaKnown RBP13.24□□□□□ -0.29
LDLR-202ENST00000455727 GPER1Q99527 375 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 LOXL2Q9Y4K0 774 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 FRYLO94915 3013 aa13.24□□□□□ -0.29
LDLR-202ENST00000455727 RFPL4AA6NLU0 287 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 F5H5K5 113 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 RFPL4AL1F8VTS6 287 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 IL2RAP01589 272 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 NAT2P11245 290 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 RPA2P15927 270 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 ZBTB25P24278 435 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 HRH1P35367 487 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 CD96P40200 585 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 KISS1Q15726 138 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 GFOD2Q3B7J2 385 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 PLAC9Q5JTB6 97 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 LYG2Q86SG7 212 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 LRRC18Q8N456 261 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 STEAP2Q8NFT2 490 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 OR5M8Q8NGP6 311 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 SPTSSAQ969W0 71 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.23□□□□□ -0.298e-6■■■■□ 26.5
LDLR-202ENST00000455727 ZNF224Q9NZL3 707 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 KIF25Q9UIL4 384 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 TMA7Q9Y2S6 64 aaKnown RBP13.23□□□□□ -0.29
LDLR-202ENST00000455727 NCKAP5O14513 1909 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 TECTAO75443 2155 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 SOCS1O15524 211 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 MTRF1O75570 445 aaKnown RBP13.23□□□□□ -0.29
LDLR-202ENST00000455727 SERPINA7P05543 415 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 CSN2P05814 226 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 PPP3CBP16298 524 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 SLC6A9P48067 706 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 TMEM50BP56557 158 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 CARD18P57730 90 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 RPS18P62269 152 aaKnown RBP13.23□□□□□ -0.29
LDLR-202ENST00000455727 FGL1Q08830 312 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 SLC22A6Q4U2R8 563 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 ACTBL2Q562R1 376 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 GGNQ86UU5 652 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 OR14L1PQ8NHC6 308 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 RHBDD1Q8TEB9 315 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 CT55Q8WUE5 264 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 OCSTAMPQ9BR26 566 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 STRADBQ9C0K7 418 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 CHST5Q9GZS9 411 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 CST11Q9H112 138 aa13.23□□□□□ -0.29
LDLR-202ENST00000455727 FXYD6-FXYD2A0A087WZ82 144 aa13.22□□□□□ -0.29
LDLR-202ENST00000455727 C5orf63A6NC05 138 aa13.22□□□□□ -0.29
LDLR-202ENST00000455727 M0R135 149 aa13.22□□□□□ -0.29
LDLR-202ENST00000455727 HLA-AP01891 365 aaKnown RBP13.22□□□□□ -0.29
LDLR-202ENST00000455727 IFNA6P05013 189 aa13.22□□□□□ -0.29
LDLR-202ENST00000455727 CD34P28906 385 aa13.22□□□□□ -0.29
LDLR-202ENST00000455727 CALCRP30988 508 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms