RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 OR1Q1Q15612 314 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 BSXQ3C1V8 233 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 SLC38A5Q8WUX1 472 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 HIST1H2BAQ96A08 127 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 SLX1AQ9BQ83 275 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 SOX7Q9BT81 388 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 SEMA6CQ9H3T2 930 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 PISDQ9UG56 409 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 ING1Q9UK53 422 aaPredicted RBP12.06□□□□□ -0.48
USP40-208ENST00000450966 MYH4Q9Y623 1939 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 FITM1A5D6W6 292 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 ZBTB42B2RXF5 422 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 ALOX5APP20292 161 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 BSGP35613 385 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 SNU13P55769 128 aaKnown RBP12.06□□□□□ -0.48
USP40-208ENST00000450966 ERVFC1-1P60608 527 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 ERVS71-1P61550 626 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 DOC2BQ14184 412 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 CRMP1Q14194 572 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 AADACL3Q5VUY0 350 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 MAMSTRQ6ZN01 415 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 S100A7AQ86SG5 101 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 MISPQ8IVT2 679 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 RBM24Q9BX46 236 aaKnown RBP12.06□□□□□ -0.48
USP40-208ENST00000450966 ZMAT3Q9HA38 289 aaKnown RBP12.06□□□□□ -0.48
USP40-208ENST00000450966 ANKRD12Q6UB98 2062 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 H3BQ15 152 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 MPPED1O15442 326 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 OPN1LWP04000 364 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 OR5H8P0DN80 308 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 GABRA4P48169 554 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 DAP3P51398 398 aaKnown RBP12.05□□□□□ -0.48
USP40-208ENST00000450966 DHRS2Q13268 280 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 PLA1AQ53H76 456 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 RNASEKQ6P5S7 137 aaKnown RBP12.05□□□□□ -0.48
USP40-208ENST00000450966 CPT1CQ8TCG5 803 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 DOK4Q8TEW6 326 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 SLC22A12Q96S37 553 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 LMF2Q9BU23 707 aaKnown RBP12.05□□□□□ -0.48
USP40-208ENST00000450966 PRSS16Q9NQE7 514 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 FBXO34Q9NWN3 711 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 TAAR2Q9P1P5 351 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 FUT9Q9Y231 359 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 NSG1A0A0A6YYJ2 146 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 C5orf52A6NGY3 159 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 C17orf105B2RV13 164 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 LANCL3Q6ZV70 420 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 TEAD3Q99594 435 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 ZDHHC8Q9ULC8 765 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 ZFAND5O76080 213 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 HMGN2P05204 90 aaKnown RBP12.05□□□□□ -0.48
USP40-208ENST00000450966 TGFBR3Q03167 851 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 HLA-DRB5Q30154 266 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 EPHX3Q9H6B9 360 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.05□□□□□ -0.48
USP40-208ENST00000450966 ZNF79Q15937 498 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 PDCD1LG2Q9BQ51 273 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 A0A1W2PN81 502 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 GPANK1O95872 356 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 AVPR2P30518 371 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 CHRNA7P36544 502 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 PRLHRP49683 370 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 SYPL1Q16563 259 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 ACKR1Q16570 336 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 SLC25A35Q3KQZ1 300 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 C6orf132Q5T0Z8 1188 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 ZNF468Q5VIY5 522 aaPredicted RBP12.05□□□□□ -0.48
USP40-208ENST00000450966 PRAMEF20Q5VT98 475 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 ZNF343Q6P1L6 599 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 ZNF813Q6ZN06 617 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 NPWQ8N729 165 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 MTFP1Q9UDX5 166 aa12.05□□□□□ -0.48
USP40-208ENST00000450966 MYH9P35579 1960 aaKnown RBP12.04□□□□□ -0.48
USP40-208ENST00000450966 CXorf51AA0A1B0GTR3 108 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 LIMS3P0CW19 117 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 LIMS4P0CW20 117 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 TCN2P20062 427 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 CNN1P51911 297 aaKnown RBP12.04□□□□□ -0.48
USP40-208ENST00000450966 ADPRHP54922 357 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 NHLH1Q02575 133 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 PLGLAQ15195 96 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 SPATA45Q537H7 98 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 MRPL21Q7Z2W9 205 aaKnown RBP12.04□□□□□ -0.48
USP40-208ENST00000450966 AMDHD1Q96NU7 426 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 AMDHD2Q9Y303 409 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 SLX4Q8IY92 1834 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 ANKRD20A5PA0PJZ0 165 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 SLC17A3O00476 420 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 LCATP04180 440 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 SLC25A4P12235 298 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 TMEFF1Q8IYR6 380 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 DTWD2Q8NBA8 298 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 MARCH1Q8TCQ1 289 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 CLDN16Q9Y5I7 305 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 COL18A1P39060 1754 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 GLCEO94923 617 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 TSFMP43897 325 aaKnown RBP12.04□□□□□ -0.48
USP40-208ENST00000450966 PMCHL1Q16048 86 aa12.04□□□□□ -0.48
USP40-208ENST00000450966 PKDCCQ504Y2 493 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms