RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ZNF774Q6NX45 483 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 TMEM88Q6PEY1 159 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 GLIPR1L1Q6UWM5 242 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 CLEC9AQ6UXN8 241 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 NUBPLQ8TB37 319 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 PGAM5Q96HS1 289 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 CALHM2Q9HA72 323 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 FAM86C1Q9NVL1 165 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 EMC3Q9P0I2 261 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 LOXL2Q9Y4K0 774 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 A0A1W2PNU3 283 aaPredicted RBP7.38□□□□□ -1.23
CD44-208ENST00000428726 A6NIZ1 184 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 STMND1H3BQB6 276 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 ACOT7O00154 380 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 TRAF3IP2O43734 574 aaPredicted RBP7.38□□□□□ -1.23
CD44-208ENST00000428726 NFYAP23511 347 aaPredicted RBP7.38□□□□□ -1.23
CD44-208ENST00000428726 MPLP40238 635 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 APOBEC1P41238 236 aaKnown RBP7.38□□□□□ -1.23
CD44-208ENST00000428726 GUCA1AP43080 201 aaPredicted RBP7.38□□□□□ -1.23
CD44-208ENST00000428726 RAP1BP61224 184 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 RAP1AP62834 184 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 GABREP78334 506 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 PMP22Q01453 160 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 SPEM2Q0P670 501 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 GK2Q14410 553 aaPredicted RBP7.38□□□□□ -1.23
CD44-208ENST00000428726 SLC9A3R2Q15599 337 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 SNAI3Q3KNW1 292 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 TEX30Q5JUR7 227 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 ELFN2Q5R3F8 820 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 TRAPPC6BQ86SZ2 158 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 CATSPERDQ86XM0 798 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 ZNF454Q8N9F8 522 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 SLC22A8Q8TCC7 542 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 RBMXL1Q96E39 390 aaKnown RBP7.38□□□□□ -1.23
CD44-208ENST00000428726 C1orf198Q9H425 327 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 ZNF701Q9NV72 531 aaPredicted RBP7.38□□□□□ -1.23
CD44-208ENST00000428726 PTTG3PQ9NZH4 202 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 SCP2D1Q9UJQ7 156 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 KLK13Q9UKR3 277 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 IGHV1-45A0A0A0MS14 117 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 CCDC163A0A0D9SF12 145 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 KNG1P01042 644 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 IGHG1P01857 330 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 RLN2P04090 185 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 SELEP16581 610 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 CFPP27918 469 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 HRH1P35367 487 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 FOLR3P41439 243 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 SSR4P51571 173 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 ZP4Q12836 540 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 UNC119Q13432 240 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 ARFRP1Q13795 201 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 TSC22D1Q15714 1073 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 STEAP1BQ6NZ63 245 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 DNM1P34Q6PK57 102 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 TMPPEQ6ZT21 453 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 FJX1Q86VR8 437 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 ARMC10Q8N2F6 343 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 ADAD2Q8NCV1 583 aaKnown RBP7.38□□□□□ -1.23
CD44-208ENST00000428726 MFSD8Q8NHS3 518 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 ST8SIA4Q92187 359 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 SIGLEC12Q96PQ1 595 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 DEFB127Q9H1M4 99 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 ACKR4Q9NPB9 350 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 PIPOXQ9P0Z9 390 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 GPR160Q9UJ42 338 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 RALYQ9UKM9 306 aaKnown RBP7.38□□□□□ -1.23
CD44-208ENST00000428726 PADI1Q9ULC6 663 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 R4GMQ9 66 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 CPAMD8Q8IZJ3 1885 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 TLN1Q9Y490 2541 aaKnown RBP7.37□□□□□ -1.23
CD44-208ENST00000428726 CCDC187A0A096LP49 1063 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 ANKRD20A5PA0PJZ0 165 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 ZIC3O60481 467 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 CREBL2O60519 120 aaPredicted RBP7.37□□□□□ -1.23
CD44-208ENST00000428726 PRAF2O60831 178 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 F12P00748 615 aaPredicted RBP7.37□□□□□ -1.23
CD44-208ENST00000428726 NAGAP17050 411 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 ZNF93P35789 620 aaPredicted RBP7.37□□□□□ -1.23
CD44-208ENST00000428726 AKR1D1P51857 326 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 MRPL14Q6P1L8 145 aaKnown RBP7.37□□□□□ -1.23
CD44-208ENST00000428726 SEZ6L2Q6UXD5 910 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 BPIFB2Q8N4F0 458 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 CT55Q8WUE5 264 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 SEH1LQ96EE3 360 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 PDCD10Q9BUL8 212 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 PROK2Q9HC23 129 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 P4HTMQ9NXG6 502 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 NOP16Q9Y3C1 178 aaKnown RBP7.37□□□□□ -1.23
CD44-208ENST00000428726 ABCA4P78363 2273 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 LOC100289279A0A1B0GTE1 492 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 TTLL8A6PVC2 850 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 MPTX1A8MV57 137 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 NXPH3O95157 252 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 LCATP04180 440 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 VSIG8P0DPA2 414 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 ICAM2P13598 275 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 M6PRP20645 277 aa7.37□□□□□ -1.23
CD44-208ENST00000428726 NUP62P37198 522 aaPredicted RBP7.37□□□□□ -1.23
CD44-208ENST00000428726 CSNK1A1P48729 337 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms