RNA–Protein interactions for RNA: ENST00000424674.1

SF3B1-205, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 723 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-205ENST00000424674 TREM2Q9NZC2 230 aa3.04□□□□□ -1.92
SF3B1-205ENST00000424674 POU2F3Q9UKI9 436 aa3.04□□□□□ -1.92
SF3B1-205ENST00000424674 SLC7A11Q9UPY5 501 aa3.04□□□□□ -1.92
SF3B1-205ENST00000424674 PPP2R2CQ9Y2T4 447 aa3.04□□□□□ -1.92
SF3B1-205ENST00000424674 LSM5Q9Y4Y9 91 aaKnown RBP3.04□□□□□ -1.92
SF3B1-205ENST00000424674 OR51B4Q9Y5P0 310 aa3.04□□□□□ -1.92
SF3B1-205ENST00000424674 USP6P35125 1406 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 PLEKHG1Q9ULL1 1385 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 IGLV5-45A0A087WSX0 123 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 IGHV4-61A0A0C4DH41 118 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 IGLV5-39A0A0G2JS06 123 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 LOC100131303A0A0U1RQF7 123 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 DAPL1A0PJW8 107 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 LINC01553A4QN01 128 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 ERVV-2B6SEH9 535 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 ANKRD65E5RJM6 399 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 PHYHO14832 338 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 NUPL2O15504 423 aaKnown RBP3.03□□□□□ -1.92
SF3B1-205ENST00000424674 RGS14O43566 566 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 FAM189A1O60320 539 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 PLIN3O60664 434 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 CNIH1O95406 144 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 TTC4O95801 387 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 HAND1O96004 215 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 IGHV4-59P01825 116 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 PPBPP02775 128 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 KLK3P07288 261 aaPredicted RBP3.03□□□□□ -1.92
SF3B1-205ENST00000424674 MRPL3P09001 348 aaKnown RBP3.03□□□□□ -1.92
SF3B1-205ENST00000424674 SNRPCP09234 159 aaKnown RBP3.03□□□□□ -1.92
SF3B1-205ENST00000424674 H2AFZP0C0S5 128 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 CDH1P12830 882 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 IFI30P13284 250 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 ICAM2P13598 275 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 PAX1P15863 534 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 MYL12AP19105 171 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 RPL12P30050 165 aaKnown RBP3.03□□□□□ -1.92
SF3B1-205ENST00000424674 GRPRP30550 384 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 SOX3P41225 446 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 BTDP43251 543 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 RPL5P46777 297 aaKnown RBP3.03□□□□□ -1.92
SF3B1-205ENST00000424674 HOXA1P49639 335 aaPredicted RBP3.03□□□□□ -1.92
SF3B1-205ENST00000424674 RAB7AP51149 207 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 ZNF121P58317 390 aaPredicted RBP3.03□□□□□ -1.92
SF3B1-205ENST00000424674 BRWD1-AS2P59051 145 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 RPS27AP62979 156 aaKnown RBP3.03□□□□□ -1.92
SF3B1-205ENST00000424674 BTN3A2P78410 334 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 SEMG2Q02383 582 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 SLC25A11Q02978 314 aaKnown RBP3.03□□□□□ -1.92
SF3B1-205ENST00000424674 TWF1Q12792 350 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 FAM53BQ14153 422 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 OR7A5Q15622 319 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 TSNQ15631 228 aaKnown RBP3.03□□□□□ -1.92
SF3B1-205ENST00000424674 ZNF726P1Q15940 193 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 TMEM97Q5BJF2 176 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 TECRLQ5HYJ1 363 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 SIRPB2Q5JXA9 342 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 LINC00242Q5T6M2 205 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 NPSR1Q6W5P4 371 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 CHMP1BQ7LBR1 199 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 PEX26Q7Z412 305 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 THOC6Q86W42 341 aaKnown RBP3.03□□□□□ -1.92
SF3B1-205ENST00000424674 ZADH2Q8N4Q0 377 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 SAMD12Q8N8I0 201 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 TMEM161BQ8NDZ6 487 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 GPR32P1Q8NGA4 272 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 OR10A6Q8NH74 314 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 OR56B4Q8NH76 319 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 RNASE11Q8TAA1 199 aaKnown RBP3.03□□□□□ -1.92
SF3B1-205ENST00000424674 RFESDQ8TAC1 157 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 ZFAND1Q8TCF1 268 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 HAVCR2Q8TDQ0 301 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 Q8WTZ3 238 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 EEF1AKMT1Q8WVE0 214 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 ARPC1AQ92747 370 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 DNAJC19Q96DA6 116 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 SMIM12Q96EX1 92 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 PIK3IP1Q96FE7 263 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 CMTM7Q96FZ5 175 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 OR10C1Q96KK4 312 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 FAM210BQ96KR6 192 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 QKIQ96PU8 341 aaKnown RBP eCLIP3.03□□□□□ -1.923e-6■□□□□ 10.1
SF3B1-205ENST00000424674 TMED9Q9BVK6 235 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 PECRQ9BY49 303 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 COA1Q9GZY4 146 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 ALX4Q9H161 411 aaPredicted RBP3.03□□□□□ -1.92
SF3B1-205ENST00000424674 C11orf49Q9H6J7 331 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 ADGRL4Q9HBW9 690 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 BIN3Q9NQY0 253 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 ABCC13Q9NSE7 274 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 ARMC1Q9NVT9 282 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 MMP17Q9ULZ9 603 aa3.03□□□□□ -1.92
SF3B1-205ENST00000424674 FRMPD3Q5JV73 1810 aa3.03□□□□□ -1.93
SF3B1-205ENST00000424674 NUP160Q12769 1436 aa3.02□□□□□ -1.93
SF3B1-205ENST00000424674 CCDC171Q6TFL3 1326 aa3.02□□□□□ -1.93
SF3B1-205ENST00000424674 IGHV2OR16-5A0A0B4J2B6 119 aa3.02□□□□□ -1.93
SF3B1-205ENST00000424674 FAM240AA0A1B0GVK7 77 aa3.02□□□□□ -1.93
SF3B1-205ENST00000424674 A0A1B0GWB2 263 aa3.02□□□□□ -1.93
SF3B1-205ENST00000424674 CEACAM18A8MTB9 384 aa3.02□□□□□ -1.93
SF3B1-205ENST00000424674 PPP5D1E7EU14 171 aa3.02□□□□□ -1.93
SF3B1-205ENST00000424674 C15orf65H3BRN8 121 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms