RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 MOSPD2Q8NHP6 518 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 GNPDA2Q8TDQ7 276 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 PIK3IP1Q96FE7 263 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 RADILQ96JH8 1075 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 RBP7Q96R05 134 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 ALG12Q9BV10 488 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 EMC6Q9BV81 110 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 MRPL13Q9BYD1 178 aaKnown RBP2.13□□□□□ -2.07
VPS13A-208ENST00000423463 ULBP2Q9BZM5 246 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 PPIL3Q9H2H8 161 aaKnown RBP2.13□□□□□ -2.07
VPS13A-208ENST00000423463 KCNK15Q9H427 330 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 PLEKHF2Q9H8W4 249 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 CRLF2Q9HC73 371 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 MED29Q9NX70 200 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 GLTPQ9NZD2 209 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 ZNF346Q9UL40 294 aaKnown RBP2.13□□□□□ -2.07
VPS13A-208ENST00000423463 V9GYQ6 96 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 CACNA1CQ13936 2221 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 LAMA5O15230 3695 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 PTPN13Q12923 2485 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 BOD1L1Q8NFC6 3051 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 TRBV4-1A0A0J9YWV2 114 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 TCRBV3S1A0A5B6 114 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 DPRXA6NFQ7 191 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 ZNF99A8MXY4 864 aaPredicted RBP2.12□□□□□ -2.07
VPS13A-208ENST00000423463 M0R3G1 203 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 BMPR1BO00238 502 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 TNFRSF11BO00300 401 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 IMPA2O14732 288 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 IDH3BO43837 385 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 OR10H3O60404 316 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 TRMUO75648 421 aaKnown RBP2.12□□□□□ -2.07
VPS13A-208ENST00000423463 DIRAS1O95057 198 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 CCNB2O95067 398 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 NDUFB2O95178 105 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 CD14P08571 375 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 QDPRP09417 244 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 PGA4P0DJD7 388 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 PGA3P0DJD8 388 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 OR8G3PP0DMU2 310 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 DNASE1P24855 282 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 ARR3P36575 388 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 RPL4P36578 427 aaKnown RBP2.12□□□□□ -2.07
VPS13A-208ENST00000423463 ACVR1BP36896 505 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 GSSP48637 474 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 UBE2NP61088 152 aaKnown RBP2.12□□□□□ -2.07
VPS13A-208ENST00000423463 RPL27P61353 136 aaKnown RBP2.12□□□□□ -2.07
VPS13A-208ENST00000423463 SPIBQ01892 262 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 LGALS3BPQ08380 585 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 TSPAN31Q12999 210 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 FLOT2Q14254 428 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 HIST3H3Q16695 136 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 RFX4Q33E94 735 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 IGSF11Q5DX21 431 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 PHYHD1Q5SRE7 291 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 THEM4Q5T1C6 240 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 C9orf135Q5VTT2 229 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 CARD17Q5XLA6 110 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 OR2T5Q6IEZ7 315 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 RPL13AP3Q6NVV1 102 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 DPY19L2P2Q6ZN68 376 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 ZNF704Q6ZNC4 412 aaPredicted RBP2.12□□□□□ -2.07
VPS13A-208ENST00000423463 CCDC121Q6ZUS5 278 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 FOXL2NBQ6ZUU3 175 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 ZER1Q7Z7L7 766 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 C10orf67Q8IYJ2 551 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 MUC20Q8N307 709 aaPredicted RBP2.12□□□□□ -2.07
VPS13A-208ENST00000423463 GCSAMQ8N6F7 178 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 ARIH2OSQ8N7S6 290 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 ZNF611Q8N823 705 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 PAPD5Q8NDF8 572 aaKnown RBP2.12□□□□□ -2.07
VPS13A-208ENST00000423463 OR4C15Q8NGM1 316 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 OR2T29Q8NH02 315 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 OR52N5Q8NH56 324 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 OR52J3Q8NH60 311 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 CANT1Q8WVQ1 401 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 PIGTQ969N2 578 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 CCDC124Q96CT7 223 aaKnown RBP2.12□□□□□ -2.07
VPS13A-208ENST00000423463 GFI1Q99684 422 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 CHID1Q9BWS9 393 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 LRMDAQ9H2I8 198 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 REEP1Q9H902 201 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 ZFP57Q9NU63 452 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 CRNNQ9UBG3 495 aaPredicted RBP2.12□□□□□ -2.07
VPS13A-208ENST00000423463 FBXL3Q9UKT7 428 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 POMPQ9Y244 141 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 SIGLEC7Q9Y286 467 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 RNF115Q9Y4L5 304 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 PKDREJQ9NTG1 2253 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 FLNCQ14315 2725 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 FLNBO75369 2602 aaKnown RBP2.12□□□□□ -2.07
VPS13A-208ENST00000423463 TENM4Q6N022 2769 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 TRAV27A0A087WT01 109 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 A0A1W2PP11 408 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 A0A1W2PPR1 153 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 DHRS12A0PJE2 317 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 M0R1B8 84 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 XKRYO14609 159 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 GNGT2O14610 69 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 CDC42EP2O14613 210 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms