RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 KCNJ16Q9NPI9 418 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 UBQLN4Q9NRR5 601 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 GFOD1Q9NXC2 390 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 PPP4R1LQ9P1A2 415 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 CLDN16Q9Y5I7 305 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 CPAMD8Q8IZJ3 1885 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 ARID1BQ8NFD5 2236 aaPredicted RBP9.49□□□□□ -0.89
USP54-204ENST00000422491 TMEM269A0A1B0GVZ9 245 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 RAD51DO75771 328 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 CHRM2P08172 466 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 SEC11BP0C7V7 166 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 RPS10P46783 165 aaKnown RBP9.49□□□□□ -0.89
USP54-204ENST00000422491 NDUFA6P56556 154 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 RPS21P63220 83 aaKnown RBP9.49□□□□□ -0.89
USP54-204ENST00000422491 PDGFRLQ15198 375 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 OR13C9Q8NGT0 318 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 ST7LQ8TDW4 575 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 ELSPBP1Q96BH3 223 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 ADAT3Q96EY9 351 aaPredicted RBP9.49□□□□□ -0.89
USP54-204ENST00000422491 S100A13Q99584 98 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 PRRX2Q99811 253 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 OR10A5Q9H207 317 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 RRAGCQ9HB90 399 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 SDHAF3Q9NRP4 125 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 A0A1W2PQU0 124 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 SOCS1O15524 211 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 CTSBP07858 339 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 CD63P08962 238 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 SLC2A1P11166 492 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 HIST1H1DP16402 221 aaKnown RBP9.49□□□□□ -0.89
USP54-204ENST00000422491 WASP42768 502 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 BIKQ13323 160 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 IAH1Q2TAA2 248 aaPredicted RBP9.49□□□□□ -0.89
USP54-204ENST00000422491 RNF144BQ7Z419 303 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 REC114Q7Z4M0 266 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 C19orf47Q8N9M1 422 aaKnown RBP9.49□□□□□ -0.89
USP54-204ENST00000422491 CPNE4Q96A23 557 aaPredicted RBP9.49□□□□□ -0.89
USP54-204ENST00000422491 GALNT14Q96FL9 552 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 IER2Q9BTL4 223 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 UCK1Q9HA47 277 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 LUZP4Q9P127 313 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 TUBD1Q9UJT1 453 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 COA3Q9Y2R0 106 aaPredicted RBP9.49□□□□□ -0.89
USP54-204ENST00000422491 FBXO7Q9Y3I1 522 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 C5orf42Q9H799 3197 aa9.49□□□□□ -0.89
USP54-204ENST00000422491 ARGFXA6NJG6 315 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 RPL36A-HNRNPH2H7BZ11 118 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 SOX1O00570 391 aaPredicted RBP9.48□□□□□ -0.89
USP54-204ENST00000422491 SLC31A2O15432 143 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 HPGDP15428 266 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 GNALP38405 381 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 SUCLG1P53597 346 aaKnown RBP9.48□□□□□ -0.89
USP54-204ENST00000422491 TMEM50BP56557 158 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 IGLV3-21P80748 117 aaPredicted RBP9.48□□□□□ -0.89
USP54-204ENST00000422491 GLO1Q04760 184 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 FUT7Q11130 342 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 CLINT1Q14677 625 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 SGCBQ16585 318 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 C1orf140Q5VVS0 124 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 RPUSD3Q6P087 351 aaKnown RBP9.48□□□□□ -0.89
USP54-204ENST00000422491 ZNF529Q6P280 563 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 DCXRQ7Z4W1 244 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 ARHGEF39Q8N4T4 335 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 TMEM104Q8NE00 496 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 OR5H2Q8NGV7 314 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 OR1E3Q8WZA6 343 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 MEGF10Q96KG7 1140 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 C1orf147Q96MC9 270 aaPredicted RBP9.48□□□□□ -0.89
USP54-204ENST00000422491 PIGQQ9BRB3 760 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 TXNIPQ9H3M7 391 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 C19orf12Q9NSK7 152 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 TRAV36DV7A0A075B6V5 113 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 A6NCN8 305 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 CXorf65A6NEN9 183 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 WISP1O95388 367 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 CLPSP04118 112 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 OR13C7P0DN81 318 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 C5AR1P21730 350 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 FCARP24071 287 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 PTGER4P35408 488 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 CAMLGP49069 296 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 SLC26A5P58743 744 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 TAS2R60P59551 318 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 SLC35A1P78382 337 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 DNLZQ5SXM8 178 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 UNQ6494/PRO21346Q6UXR6 183 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 TTLL10Q6ZVT0 673 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 OR10D4PQ8NGN7 298 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 BSCL2Q96G97 398 aaPredicted RBP9.48□□□□□ -0.89
USP54-204ENST00000422491 GAS2L1Q99501 681 aaPredicted RBP9.48□□□□□ -0.89
USP54-204ENST00000422491 SRPK3Q9UPE1 567 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 MRPS23Q9Y3D9 190 aaKnown RBP9.48□□□□□ -0.89
USP54-204ENST00000422491 ARID1AO14497 2285 aa9.48□□□□□ -0.89
USP54-204ENST00000422491 SEC14L6B5MCN3 397 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 H7C1Q1 480 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 SCDO00767 359 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 C1QL1O75973 258 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 TTRP02766 147 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 MMP16P51512 607 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 HSD11B2P80365 405 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms