RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 SHISA3A0PJX4 238 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 MEGF11A6BM72 1044 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 A6NIN4 97 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 NOTOA8MTQ0 251 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 PYCARD-AS1I3L0S3 204 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 SMPD2O60906 423 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 CLPXO76031 633 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 RAB3AP20336 220 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 ANOS1P23352 680 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 GSK3AP49840 483 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 PPP1CBP62140 327 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 ZNF101Q8IZC7 436 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 OR1J1Q8NGS3 322 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 ITFG2Q969R8 447 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 SPSB4Q96A44 273 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 ADAT3Q96EY9 351 aaPredicted RBP14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 SOX7Q9BT81 388 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 BCL2L14Q9BZR8 327 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 ZCCHC4Q9H5U6 513 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 NDRG3Q9UGV2 375 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 STARD10Q9Y365 291 aa14.8□□□□□ -0.04
CCDC28B-202ENST00000421922 TRAV8-7A0A075B6U6 113 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 IGHV2OR16-5A0A0B4J2B6 119 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 ANKRD61A6NGH8 418 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 NGFP01138 241 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 FAHP16930 419 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 S100A5P33763 92 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 UCP2P55851 309 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 CAV3P56539 151 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 FAM3AP98173 230 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 NAAAQ02083 359 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 SPOCK1Q08629 439 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 IDNKQ5T6J7 187 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 GLT8D1Q68CQ7 371 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 SFXN4Q6P4A7 337 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 MZT2AQ6P582 158 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 TMEM108Q6UXF1 575 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 C1orf174Q8IYL3 243 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 NKAIN3Q8N8D7 197 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 OR1M1Q8NGA1 313 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 OR13C9Q8NGT0 318 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 DACH2Q96NX9 599 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 SLIRPQ9GZT3 109 aaKnown RBP14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 MMP27Q9H306 513 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 PLGRKTQ9HBL7 147 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 V9GY05 133 aa14.79□□□□□ -0.04
CCDC28B-202ENST00000421922 SULT1B1O43704 296 aa14.78□□□□□ -0.04
CCDC28B-202ENST00000421922 HCKP08631 526 aa14.78□□□□□ -0.04
CCDC28B-202ENST00000421922 IGFBP3P17936 291 aaPredicted RBP14.78□□□□□ -0.04
CCDC28B-202ENST00000421922 TUBG1P23258 451 aa14.78□□□□□ -0.04
CCDC28B-202ENST00000421922 BDKRB2P30411 391 aa14.78□□□□□ -0.04
CCDC28B-202ENST00000421922 DDOSTP39656 456 aa14.78□□□□□ -0.04
CCDC28B-202ENST00000421922 OR10A3P58181 314 aa14.78□□□□□ -0.04
CCDC28B-202ENST00000421922 GK2Q14410 553 aaPredicted RBP14.78□□□□□ -0.04
CCDC28B-202ENST00000421922 SPATA46Q5T0L3 261 aa14.78□□□□□ -0.04
CCDC28B-202ENST00000421922 ZBTB37Q5TC79 503 aa14.78□□□□□ -0.04
CCDC28B-202ENST00000421922 XKRXQ6PP77 449 aa14.78□□□□□ -0.04
CCDC28B-202ENST00000421922 CSNK2A3Q8NEV1 391 aa14.78□□□□□ -0.04
CCDC28B-202ENST00000421922 RADILQ96JH8 1075 aa14.78□□□□□ -0.04
CCDC28B-202ENST00000421922 TUBG2Q9NRH3 451 aa14.78□□□□□ -0.04
CCDC28B-202ENST00000421922 NPAP1Q9NZP6 1156 aa14.78□□□□□ -0.04
CCDC28B-202ENST00000421922 KCNN3Q9UGI6 736 aa14.78□□□□□ -0.04
CCDC28B-202ENST00000421922 DAPK2Q9UIK4 370 aa14.78□□□□□ -0.04
CCDC28B-202ENST00000421922 A3GALT2U3KPV4 340 aa14.78□□□□□ -0.04
CCDC28B-202ENST00000421922 ZNF816-ZNF321PA0A0X1KG74 233 aa14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 ICMTO60725 284 aa14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 ZNF35P13682 527 aa14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 SELEP16581 610 aa14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 PTAFRP25105 342 aa14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 RANBP1P43487 201 aa14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 RPS23P62266 143 aaKnown RBP14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 SORDQ00796 357 aa14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 HLXQ14774 488 aaPredicted RBP14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 CNN3Q15417 329 aaKnown RBP14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 OR8B8Q15620 311 aa14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 Q6ZSR3 168 aa14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 LRRTM1Q86UE6 522 aa14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 ZNF808Q8N4W9 903 aaPredicted RBP14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 OR56B2PQ8NGI1 322 aa14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 ZNF671Q8TAW3 534 aa14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 ACOT12Q8WYK0 555 aa14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 CEP19Q96LK0 163 aa14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 REPIN1Q9BWE0 567 aaKnown RBP14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 BARHL1Q9BZE3 327 aa14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 CHST5Q9GZS9 411 aa14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 SMURF1Q9HCE7 757 aa14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 TMEM138Q9NPI0 162 aa14.77□□□□□ -0.04
CCDC28B-202ENST00000421922 HIVEP3Q5T1R4 2406 aa14.77□□□□□ -0.05
CCDC28B-202ENST00000421922 RGS5O15539 181 aa14.76□□□□□ -0.05
CCDC28B-202ENST00000421922 CLDN14O95500 239 aa14.76□□□□□ -0.05
CCDC28B-202ENST00000421922 AGAP20933 346 aa14.76□□□□□ -0.05
CCDC28B-202ENST00000421922 GCH1P30793 250 aa14.76□□□□□ -0.05
CCDC28B-202ENST00000421922 CALCRP30988 508 aa14.76□□□□□ -0.05
CCDC28B-202ENST00000421922 PRSS12P56730 875 aa14.76□□□□□ -0.05
CCDC28B-202ENST00000421922 CLVS2Q5SYC1 327 aa14.76□□□□□ -0.05
CCDC28B-202ENST00000421922 HES5Q5TA89 166 aa14.76□□□□□ -0.05
CCDC28B-202ENST00000421922 DDI2Q5TDH0 399 aa14.76□□□□□ -0.05
CCDC28B-202ENST00000421922 UTS2BQ765I0 119 aa14.76□□□□□ -0.05
CCDC28B-202ENST00000421922 JAGN1Q8N5M9 183 aa14.76□□□□□ -0.05
CCDC28B-202ENST00000421922 DNAAF1Q8NEP3 725 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms