RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 NKAIN2Q5VXU1 208 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 ADGRL4Q9HBW9 690 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 UQCC1Q9NVA1 299 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 PPP1R3CQ9UQK1 317 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 LOXHD1Q8IVV2 1947 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 CTAG2O75638 210 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 TNFSF4P23510 183 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 KRTDAPP60985 99 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 SLC35B3Q9H1N7 401 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 RCL1Q9Y2P8 373 aaKnown RBP17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 SMCHD1A6NHR9 2005 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 TRAF3IP2O43734 574 aaPredicted RBP17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 ICOSLGO75144 302 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 IGHV3-9P01782 118 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 TCN2P20062 427 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 MRPS21P82921 87 aaKnown RBP17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 WDR38Q5JTN6 314 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 OR2A2Q6IF42 318 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 SSX7Q7RTT5 188 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 SLC39A7Q92504 469 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 PAX6P26367 422 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 YBX1P67809 324 aaKnown RBP17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 OR2B11Q5JQS5 317 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 SLC17A5Q9NRA2 495 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 SLC35D1Q9NTN3 355 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 OR10J4P0C629 311 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 ST6GAL1P15907 406 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 COX5AP20674 150 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 TUSC1Q2TAM9 212 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 TRIM61Q5EBN2 209 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 PRAMEF5Q5TYX0 476 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 PRAMEF6Q5VXH4 476 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 B3GNTL1Q67FW5 361 aaPredicted RBP17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 CA13Q8N1Q1 262 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 OR5M9Q8NGP3 310 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 ZBP1Q9H171 429 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 GGNBP1Q5YKI7 109 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 UBE3DQ7Z6J8 389 aa17.61■□□□□ 0.41
CCDC88B-202ENST00000356786 CLDN34H7C241 214 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 SPINT2O43291 252 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 MBTPS2O43462 519 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 EDDM3AQ14507 147 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 C9orf152Q5JTZ5 239 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 BAHD1Q8TBE0 780 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 A0A087WUJ7 227 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 C9orf170A2RU37 121 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 SERPINE3A8MV23 424 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 AP4M1O00189 453 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 OR2J2O76002 312 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 SPP1P10451 314 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 KCNJ3P48549 501 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 ASCL1P50553 236 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 EDDM3BP56851 147 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 LAIR1Q6GTX8 287 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 MRM1Q6IN84 353 aaKnown RBP17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 THSD4Q6ZMP0 1018 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 C10orf111Q8N326 155 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 UCK1Q9HA47 277 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 PISDQ9UG56 409 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 DOCK1Q14185 1865 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 NOVA1P51513 510 aaKnown RBP17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 PNLIPRP3Q17RR3 467 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 CDONQ4KMG0 1287 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 C4orf45Q96LM5 186 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 RAB18Q9NP72 206 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 OPN4Q9UHM6 478 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 A0A1B0GTH9 108 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 SLC37A1P57057 533 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 FXNQ16595 210 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 ZNF468Q5VIY5 522 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 OR4D9Q8NGE8 314 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 OR5B3Q8NH48 314 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 LRP12Q9Y561 859 aa17.6■□□□□ 0.41
CCDC88B-202ENST00000356786 TRBV5-3A0A0A0MS03 114 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 TNFRSF10CO14798 259 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 TIMM8AO60220 97 aaPredicted RBP17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 NRASP01111 189 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 CSNK1EP49674 416 aaKnown RBP17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 IQCJQ1A5X6 159 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 ISOC2Q96AB3 205 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 PSENENQ9NZ42 101 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 GHRLQ9UBU3 117 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 MIOXQ9UGB7 285 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 DLEC1Q9Y238 1755 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 A0A0B4J2E0 115 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 A0A1B0GX12 115 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 ZNF749O43361 778 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 WNT11O96014 354 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 NCMAPQ5T1S8 102 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 ABI3BPQ7Z7G0 1075 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 LINC00615Q96LM1 132 aaPredicted RBP17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 OR6C1Q96RD1 312 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 MED19A0JLT2 244 aaPredicted RBP17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 CDC42EP2O14613 210 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 ABOP16442 354 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 RAB5AP20339 215 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 TBXA2RP21731 343 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 FPR2P25090 351 aa17.59■□□□□ 0.41
CCDC88B-202ENST00000356786 RPL29P47914 159 aaKnown RBP17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms